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Crystal structure of HIV-gp120 core in complex with CD4-binding site antibody b13, space group C2221
Sequence Clustering and Redundancy Reduction Results
3IDY
Sequence Clusters for the Sequence Entities in PDB 3IDY
Entity #1: Chains: A,G - HIV-1 HxBc2 gp120 core protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 11923
95% 15 15 3240
90% 15 15 3278
70% 23 31 973
50% 23 31 1021
40% 23 31 1044
30% 23 33 979
Entity #2: Chains: B,H - Fab b13 heavy chain protein, length: 231 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 22145
95% 2 2 18617
90% 2 2 18106
70% 1335 1672 1
50% 2761 3457 1
40% 2762 3458 1
30% 3234 4083 1
Entity #3: Chains: C,L - Fab b13 light chain protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 22423
95% 2 2 18825
90% 340 431 4
70% 1161 1445 3
50% 2762 3457 1
40% 2763 3458 1
30% 3235 4083 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.