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Crystal structure of HIV-gp120 core in complex with CD4-binding site antibody b13, space group C2221
Sequence Clustering and Redundancy Reduction Results
3IDY
Sequence Clusters for the Sequence Entities in PDB 3IDY
Entity #1: Chains: A,G - HIV-1 HxBc2 gp120 core protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 11806
95% 15 15 3166
90% 15 15 3203
70% 23 29 1119
50% 23 29 1187
40% 23 29 1214
30% 23 31 1105
Entity #2: Chains: B,H - Fab b13 heavy chain protein, length: 231 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 21931
95% 2 2 18439
90% 2 2 17947
70% 1326 1656 1
50% 2743 3425 1
40% 2744 3426 1
30% 3210 4043 1
Entity #3: Chains: C,L - Fab b13 light chain protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 22205
95% 2 2 18647
90% 338 425 4
70% 1157 1434 3
50% 2744 3425 1
40% 2745 3426 1
30% 3211 4043 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.