Sequence Similarity Clusters for the Entities in PDB 3IDY

Entity #1 | Chains: A,G
HIV-1 HxBc2 gp120 core protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 13097
95 % 15 15 3545
90 % 15 15 3582
70 % 87 121 166
50 % 87 121 198
40 % 87 121 214
30 % 87 124 223
Entity #2 | Chains: B,H
Fab b13 heavy chain protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 24212
95 % 2 2 20264
90 % 2 2 19685
70 % 1501 1912 1
50 % 3096 3940 1
40 % 3097 3941 1
30 % 3655 4669 1
Entity #3 | Chains: C,L
Fab b13 light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 24503
95 % 2 2 20479
90 % 391 505 3
70 % 1289 1620 3
50 % 3097 3940 1
40 % 3098 3941 1
30 % 3656 4669 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.