Sequence Similarity Clusters for the Entities in PDB 3IDY

Entity #1 | Chains: A,G
HIV-1 HxBc2 gp120 core protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 13195
95 % 15 15 3563
90 % 15 15 3600
70 % 87 121 167
50 % 87 121 199
40 % 87 121 217
30 % 87 124 223
Entity #2 | Chains: B,H
Fab b13 heavy chain protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 24380
95 % 2 2 20390
90 % 2 2 19805
70 % 1511 1932 1
50 % 3120 3985 1
40 % 3121 3986 1
30 % 3680 4715 1
Entity #3 | Chains: C,L
Fab b13 light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 24671
95 % 2 2 20605
90 % 396 518 3
70 % 1299 1639 3
50 % 3121 3985 1
40 % 3122 3986 1
30 % 3681 4715 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.