Sequence Similarity Clusters for the Entities in PDB 3IDY

Entity #1 | Chains: A,G
HIV-1 HxBc2 gp120 core protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 14647
95 % 15 15 3973
90 % 15 15 4010
70 % 91 126 178
50 % 91 126 221
40 % 91 126 240
30 % 91 129 248
Entity #2 | Chains: B,H
Fab b13 heavy chain protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 27050
95 % 2 2 22590
90 % 2 2 21924
70 % 1713 2238 2
50 % 3543 4619 1
40 % 3543 4619 1
30 % 4178 5440 1
Entity #3 | Chains: C,L
Fab b13 light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 27389
95 % 2 2 22837
90 % 536 697 3
70 % 1747 2280 1
50 % 3544 4619 1
40 % 3544 4619 1
30 % 4179 5440 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.