Sequence Similarity Clusters for the Entities in PDB 3IDY

Entity #1 | Chains: A,G
HIV-1 HxBc2 gp120 core protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 12430
95 % 15 15 3385
90 % 15 15 3424
70 % 23 31 1013
50 % 23 31 1063
40 % 23 31 1088
30 % 82 111 242
Entity #2 | Chains: B,H
Fab b13 heavy chain protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 23135
95 % 2 2 19433
90 % 2 2 18882
70 % 1423 1790 1
50 % 2936 3692 1
40 % 2937 3693 1
30 % 3438 4355 1
Entity #3 | Chains: C,L
Fab b13 light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 23420
95 % 2 2 19645
90 % 362 461 4
70 % 1224 1526 3
50 % 2937 3692 1
40 % 2938 3693 1
30 % 3439 4355 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.