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An Information Portal to 106082 Biological Macromolecular Structures

Crystal structure of HIV-gp120 core in complex with CD4-binding site antibody b13, space group C2221
Sequence Clustering and Redundancy Reduction Results
3IDY
Sequence Clusters for the Sequence Entities in PDB 3IDY
Entity #1: Chains: A,G - HIV-1 HxBc2 gp120 core protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 11215
95% 15 15 3010
90% 15 15 3050
70% 23 29 1075
50% 23 29 1140
40% 23 29 1161
30% 23 31 1061
Entity #2: Chains: B,H - Fab b13 heavy chain protein, length: 231 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 20941
95% 2 2 17660
90% 2 2 17198
70% 1238 1528 2
50% 2569 3170 1
40% 2570 3171 1
30% 3011 3753 1
Entity #3: Chains: C,L - Fab b13 light chain protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 21199
95% 2 2 17852
90% 303 377 5
70% 1091 1332 3
50% 2570 3170 1
40% 2571 3171 1
30% 3012 3753 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.