Sequence Similarity Clusters for the Entities in PDB 3IDY

Entity #1 | Chains: A,G
HIV-1 HxBc2 gp120 core protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 4 12858
95 % 15 15 3489
90 % 15 15 3526
70 % 87 120 165
50 % 87 120 196
40 % 87 120 212
30 % 87 123 222
Entity #2 | Chains: B,H
Fab b13 heavy chain protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 23817
95 % 2 2 19965
90 % 2 2 19406
70 % 1468 1866 1
50 % 3028 3846 1
40 % 3029 3847 1
30 % 3586 4574 1
Entity #3 | Chains: C,L
Fab b13 light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 24107
95 % 2 2 20180
90 % 374 482 4
70 % 1262 1583 3
50 % 3029 3846 1
40 % 3030 3847 1
30 % 3587 4574 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.