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Crystal structure of HIV-gp120 core in complex with CD4-binding site antibody b13, space group C222
Sequence Clustering and Redundancy Reduction Results
3IDX
Sequence Clusters for the Sequence Entities in PDB 3IDX
Entity #1: Chains: G - HIV-1 HxBc2 gp120 core protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 11942
95% 9 15 3248
90% 9 15 3285
70% 11 31 975
50% 11 31 1024
40% 11 31 1047
30% 11 33 980
Entity #2: Chains: H - Fab b13 heavy chain protein, length: 231 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 22194
95% 1 2 18658
90% 1 2 18142
70% 739 1682 1
50% 1516 3477 1
40% 1517 3478 1
30% 1684 4103 1
Entity #3: Chains: L - Fab b13 light chain protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 22471
95% 1 2 18865
90% 171 433 4
70% 624 1454 3
50% 1517 3477 1
40% 1518 3478 1
30% 1685 4103 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.