POP-OUT | CLOSE

An Information Portal to 110790 Biological Macromolecular Structures

Crystal structure of HIV-gp120 core in complex with CD4-binding site antibody b13, space group C222
Sequence Clustering and Redundancy Reduction Results
3IDX
Sequence Clusters for the Sequence Entities in PDB 3IDX
Entity #1: Chains: G - HIV-1 HxBc2 gp120 core protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 11806
95% 9 15 3166
90% 9 15 3203
70% 11 29 1119
50% 11 29 1187
40% 11 29 1214
30% 11 31 1105
Entity #2: Chains: H - Fab b13 heavy chain protein, length: 231 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 21931
95% 1 2 18439
90% 1 2 17947
70% 730 1656 1
50% 1498 3425 1
40% 1499 3426 1
30% 1666 4043 1
Entity #3: Chains: L - Fab b13 light chain protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 22205
95% 1 2 18647
90% 170 425 4
70% 619 1434 3
50% 1499 3425 1
40% 1500 3426 1
30% 1667 4043 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.