Sequence Similarity Clusters for the Entities in PDB 3IDX

Entity #1 | Chains: G
HIV-1 HxBc2 gp120 core protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 12950
95 % 9 15 3515
90 % 9 15 3552
70 % 50 120 166
50 % 50 120 196
40 % 50 120 213
30 % 50 123 222
Entity #2 | Chains: H
Fab b13 heavy chain protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 23963
95 % 1 2 20085
90 % 1 2 19511
70 % 832 1894 1
50 % 1705 3902 1
40 % 1706 3903 1
30 % 1919 4631 1
Entity #3 | Chains: L
Fab b13 light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 24253
95 % 1 2 20299
90 % 200 500 4
70 % 697 1609 3
50 % 1706 3902 1
40 % 1707 3903 1
30 % 1920 4631 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.