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Crystal structure of HIV-gp120 core in complex with CD4-binding site antibody b13, space group C222
Sequence Clustering and Redundancy Reduction Results
3IDX
Sequence Clusters for the Sequence Entities in PDB 3IDX
Entity #1: Chains: G - HIV-1 HxBc2 gp120 core protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 11428
95% 9 15 3071
90% 9 15 3108
70% 11 29 1090
50% 11 29 1149
40% 11 29 1176
30% 11 31 1074
Entity #2: Chains: H - Fab b13 heavy chain protein, length: 231 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 21255
95% 1 2 17874
90% 1 2 17402
70% 687 1548 2
50% 1413 3210 1
40% 1414 3211 1
30% 1575 3793 1
Entity #3: Chains: L - Fab b13 light chain protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 21520
95% 1 2 18073
90% 158 389 4
70% 587 1349 3
50% 1414 3210 1
40% 1415 3211 1
30% 1576 3793 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.