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Crystal structure of HIV-gp120 core in complex with CD4-binding site antibody b13, space group C222
Sequence Clustering and Redundancy Reduction Results
3IDX
Sequence Clusters for the Sequence Entities in PDB 3IDX
Entity #1: Chains: G - HIV-1 HxBc2 gp120 core protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 11489
95% 9 15 3088
90% 9 15 3128
70% 11 29 1100
50% 11 29 1159
40% 11 29 1184
30% 11 31 1078
Entity #2: Chains: H - Fab b13 heavy chain protein, length: 231 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 21376
95% 1 2 17974
90% 1 2 17506
70% 693 1564 2
50% 1425 3242 1
40% 1426 3243 1
30% 1587 3827 1
Entity #3: Chains: L - Fab b13 light chain protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 21645
95% 1 2 18177
90% 158 389 5
70% 590 1361 3
50% 1426 3242 1
40% 1427 3243 1
30% 1588 3827 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.