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Crystal structure of HIV-gp120 core in complex with CD4-binding site antibody b13, space group C222
Sequence Clustering and Redundancy Reduction Results
3IDX
Sequence Clusters for the Sequence Entities in PDB 3IDX
Entity #1: Chains: G - HIV-1 HxBc2 gp120 core protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 11583
95% 9 15 3107
90% 9 15 3146
70% 11 29 1108
50% 11 29 1165
40% 11 29 1191
30% 11 31 1087
Entity #2: Chains: H - Fab b13 heavy chain protein, length: 231 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 21541
95% 1 2 18105
90% 1 2 17631
70% 697 1590 2
50% 1434 3295 1
40% 1435 3296 1
30% 1598 3893 1
Entity #3: Chains: L - Fab b13 light chain protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 21811
95% 1 2 18308
90% 165 413 4
70% 595 1388 3
50% 1435 3295 1
40% 1436 3296 1
30% 1599 3893 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.