Sequence Similarity Clusters for the Entities in PDB 3IDX

Entity #1 | Chains: G
HIV-1 HxBc2 gp120 core protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 16649
95 % 9 15 4605 Flexibility: Medium
Max RMSD: 16.1, Avg RMSD: 5.5
PDBFlex
90 % 9 15 4634
70 % 53 200 130
50 % 53 200 152
40 % 53 200 165
30 % 53 203 182
Entity #2 | Chains: H
Fab b13 heavy chain protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27629
95 % 1 2 24337 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 142 319 13
70 % 1181 2706 2
50 % 2438 5577 1
40 % 2797 6322 1
30 % 3391 7862 1
Entity #3 | Chains: L
Fab b13 light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 31597
95 % 1 2 23746 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 378 857 2
70 % 1190 2747 1
50 % 2439 5577 1
40 % 2798 6322 1
30 % 3392 7862 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures