Sequence Similarity Clusters for the Entities in PDB 3IDX

Entity #1 | Chains: G
HIV-1 HxBc2 gp120 core protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 12747
95 % 9 15 3469
90 % 9 15 3506
70 % 50 120 165
50 % 50 120 196
40 % 50 120 211
30 % 50 123 222
Entity #2 | Chains: H
Fab b13 heavy chain protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 23673
95 % 1 2 19852
90 % 1 2 19294
70 % 811 1850 1
50 % 1663 3813 1
40 % 1664 3814 1
30 % 1877 4537 1
Entity #3 | Chains: L
Fab b13 light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 23962
95 % 1 2 20066
90 % 189 476 4
70 % 677 1568 3
50 % 1664 3813 1
40 % 1665 3814 1
30 % 1878 4537 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.