Sequence Similarity Clusters for the Entities in PDB 3IDX

Entity #1 | Chains: G
HIV-1 HxBc2 gp120 core protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 13195
95 % 9 15 3563
90 % 9 15 3600
70 % 50 121 167
50 % 50 121 199
40 % 50 121 217
30 % 50 124 223
Entity #2 | Chains: H
Fab b13 heavy chain protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 24380
95 % 1 2 20390
90 % 1 2 19805
70 % 846 1932 1
50 % 1738 3985 1
40 % 1739 3986 1
30 % 1953 4715 1
Entity #3 | Chains: L
Fab b13 light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 24671
95 % 1 2 20605
90 % 205 518 3
70 % 709 1639 3
50 % 1739 3985 1
40 % 1740 3986 1
30 % 1954 4715 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.