POP-OUT | CLOSE
 
Crystal structure of HIV-gp120 core in complex with CD4-binding site antibody b13, space group C222
Sequence Clustering and Redundancy Reduction Results
3IDX
Sequence Clusters for the Sequence Entities in PDB 3IDX
Entity #1: Chains: G - HIV-1 HxBc2 gp120 core protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 10783
95% 9 15 2816
90% 9 15 2862
70% 11 27 1154
50% 11 27 1216
40% 11 27 1250
30% 11 29 1149
Entity #2: Chains: H - Fab b13 heavy chain protein, length: 231 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 20150
95% 1 2 17023
90% 1 2 16590
70% 651 1461 2
50% 1338 3031 1
40% 1339 3032 1
30% 1494 3590 1
Entity #3: Chains: L - Fab b13 light chain protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 20399
95% 1 2 17208
90% 147 360 4
70% 555 1274 3
50% 1339 3031 1
40% 1340 3032 1
30% 1495 3590 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.