Sequence Similarity Clusters for the Entities in PDB 3IDX

Entity #1 | Chains: G
HIV-1 HxBc2 gp120 core protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 14517
95 % 9 15 3945 Flexibility: Medium
Max RMSD: 16.1, Avg RMSD: 5.5
PDBFlex
90 % 9 15 3981
70 % 52 126 178
50 % 52 126 221
40 % 52 126 240
30 % 52 129 248
Entity #2 | Chains: H
Fab b13 heavy chain protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 26739
95 % 1 2 22312 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 1 2 21659
70 % 966 2222 2
50 % 1994 4587 1
40 % 1994 4587 1
30 % 2241 5392 1
Entity #3 | Chains: L
Fab b13 light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27075
95 % 1 2 22560 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 292 693 3
70 % 975 2264 1
50 % 1995 4587 1
40 % 1995 4587 1
30 % 2242 5392 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.