Sequence Similarity Clusters for the Entities in PDB 3IDX

Entity #1 | Chains: G
HIV-1 HxBc2 gp120 core protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 13865
95 % 9 15 3772
90 % 9 15 3805
70 % 51 125 172
50 % 51 125 211
40 % 51 125 234
30 % 51 128 239
Entity #2 | Chains: H
Fab b13 heavy chain protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 25591
95 % 1 2 21370
90 % 1 2 20765
70 % 909 2066 1
50 % 1876 4272 1
40 % 1876 4272 1
30 % 2108 5038 1
Entity #3 | Chains: L
Fab b13 light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 25913
95 % 1 2 21611
90 % 266 632 3
70 % 763 1752 2
50 % 1877 4272 1
40 % 1877 4272 1
30 % 2109 5038 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.