Sequence Similarity Clusters for the Entities in PDB 3IDX

Entity #1 | Chains: G
HIV-1 HxBc2 gp120 core protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 17693
95 % 9 15 4497 Flexibility: Medium
Max RMSD: 16.1, Avg RMSD: 5.5
PDBFlex
90 % 9 15 4538
70 % 53 189 130
50 % 53 189 158
40 % 53 189 168
30 % 53 192 182
Entity #2 | Chains: H
Fab b13 heavy chain protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27086
95 % 1 2 23878 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 139 313 14
70 % 1153 2629 2
50 % 2382 5421 1
40 % 2730 6121 1
30 % 3299 7588 1
Entity #3 | Chains: L
Fab b13 light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27246
95 % 1 2 23303 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 367 832 2
70 % 1163 2670 1
50 % 2383 5421 1
40 % 2731 6121 1
30 % 3300 7588 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures