Sequence Similarity Clusters for the Entities in PDB 3IDX

Entity #1 | Chains: G
HIV-1 HxBc2 gp120 core protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 15497
95 % 9 15 4193 Flexibility: Medium
Max RMSD: 16.1, Avg RMSD: 6.3
PDBFlex
90 % 9 15 4236
70 % 53 130 185
50 % 53 130 226
40 % 53 130 243
30 % 53 133 251
Entity #2 | Chains: H
Fab b13 heavy chain protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28444
95 % 1 2 23706 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 1 2 22971
70 % 1075 2429 2
50 % 2223 5021 1
40 % 2223 5021 1
30 % 2534 5951 1
Entity #3 | Chains: L
Fab b13 light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28790
95 % 1 2 23962 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 346 791 2
70 % 1089 2479 1
50 % 2224 5021 1
40 % 2224 5021 1
30 % 2535 5951 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures