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Crystal structure of HIV-gp120 core in complex with CD4-binding site antibody b13, space group C222
Sequence Clustering and Redundancy Reduction Results
3IDX
Sequence Clusters for the Sequence Entities in PDB 3IDX
Entity #1: Chains: G - HIV-1 HxBc2 gp120 core protein, length: 317 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 11124
95% 9 15 2977
90% 9 15 3014
70% 11 28 1097
50% 11 28 1169
40% 11 28 1188
30% 11 30 1107
Entity #2: Chains: H - Fab b13 heavy chain protein, length: 231 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 20774
95% 1 2 17528
90% 1 2 17070
70% 672 1514 2
50% 1383 3142 1
40% 1384 3143 1
30% 1543 3719 1
Entity #3: Chains: L - Fab b13 light chain protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 21029
95% 1 2 17718
90% 151 374 5
70% 575 1320 3
50% 1384 3142 1
40% 1385 3143 1
30% 1544 3719 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.