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An Information Portal to 110790 Biological Macromolecular Structures

Newly identified epitope N1 derived from SARS-CoV N protein complexed with HLA-A*2402
Sequence Clustering and Redundancy Reduction Results
3I6L
Sequence Clusters for the Sequence Entities in PDB 3I6L
Entity #1: Chains: D - HLA class I histocompatibility antigen, A-24 alpha chain protein, length: 274 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 19 1158
95% 10 19 1583
90% 158 231 23
70% 383 564 7
50% 384 569 7
40% 407 605 11
30% 442 712 13
Entity #2: Chains: E - Beta-2-microglobulin protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 335 483 2
95% 351 512 3
90% 355 520 3
70% 465 732 5
50% 474 750 5
40% 474 750 9
30% 474 750 11
Entity #3: Chains: F - Nucleoprotein peptide protein, length: 9 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.