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Newly identified epitope N1 derived from SARS-CoV N protein complexed with HLA-A*2402
Sequence Clustering and Redundancy Reduction Results
3I6L
Sequence Clusters for the Sequence Entities in PDB 3I6L
Entity #1: Chains: D - HLA class I histocompatibility antigen, A-24 alpha chain protein, length: 274 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 17 1252
95% 9 17 1709
90% 148 217 22
70% 350 523 7
50% 351 528 7
40% 374 556 10
30% 378 578 15
Entity #2: Chains: E - Beta-2-microglobulin protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 302 442 2
95% 317 470 3
90% 321 478 3
70% 427 678 5
50% 435 691 5
40% 435 691 6
30% 435 691 11
Entity #3: Chains: F - Nucleoprotein peptide protein, length: 9 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.