Sequence Similarity Clusters for the Entities in PDB 3HZI

Entity #1 | Chains: A
Protein hipA protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 12 4020
95 % 10 13 3788 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 1.7
PDBFlex
90 % 10 13 3853
70 % 10 13 3783
50 % 10 13 3682
40 % 10 13 3518
30 % 11 16 2599
Entity #2 | Chains: B
HTH-type transcriptional regulator hipB protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 18110
95 % 3 4 12011 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 3 4 11836
70 % 3 4 11191
50 % 3 4 10030
40 % 3 4 9068
30 % 3 4 7819
Entity #3 | Chains: T
5'-D(*DAP*DCP*DTP*DAP*DTP*DCP*DCP*DCP*DCP*DTP*DTP*DAP*DAP*DGP*DGP*DGP*DGP*DAP*DTP*DAP*DG)-3' dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures