Sequence Similarity Clusters for the Entities in PDB 3HZI

Entity #1 | Chains: A
Protein hipA protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 12 4110
95 % 10 13 3879 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 1.7
PDBFlex
90 % 10 13 3934
70 % 10 13 3853
50 % 10 13 3735
40 % 10 13 3569
30 % 11 16 2648
Entity #2 | Chains: B
HTH-type transcriptional regulator hipB protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 19061
95 % 3 4 12500 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 3 4 12306
70 % 3 4 11607
50 % 3 4 10208
40 % 3 4 9225
30 % 3 4 7954
Entity #3 | Chains: T
5'-D(*DAP*DCP*DTP*DAP*DTP*DCP*DCP*DCP*DCP*DTP*DTP*DAP*DAP*DGP*DGP*DGP*DGP*DAP*DTP*DAP*DG)-3' dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures