Sequence Similarity Clusters for the Entities in PDB 3HT3

Entity #1 | Chains: A,D
DNA polymerase I, large fragment protein, length: 579 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 30560
95 % 37 95 290 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 37 95 301
70 % 37 95 345
50 % 37 95 411
40 % 37 95 435
30 % 37 95 435
Entity #2 | Chains: B,E
5'-D(*CP*GP*AP*TP*CP*AP*CP*GP*(DOC))-3' dna, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C,F
5'-D(*AP*CP*GP*GP*CP*GP*TP*GP*AP*TP*CP*G)-3' dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.