Sequence Similarity Clusters for the Entities in PDB 3HI1

Entity #1 | Chains: G,J
Glycoprotein 120 protein, length: 321 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 19851
95 % 1 2 17611 Flexibility: Medium
Max RMSD: 6.7, Avg RMSD: 4.6
PDBFlex
90 % 7 13 2816
70 % 84 130 185
50 % 84 130 226
40 % 84 130 243
30 % 84 133 251
Entity #2 | Chains: A,L
F105 Light Chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28784
95 % 62 90 246 Flexibility: Low
Max RMSD: 6.2, Avg RMSD: 1.9
PDBFlex
90 % 546 791 2
70 % 1693 2479 1
50 % 3431 5021 1
40 % 3431 5021 1
30 % 4062 5951 1
Entity #3 | Chains: B,H
F105 Heavy Chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 28527
95 % 1 2 23772
90 % 1 2 23028
70 % 1655 2429 2
50 % 3432 5021 1
40 % 3432 5021 1
30 % 4063 5951 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5I1K 1 L FAB LIGHT CHAIN 9606
2 4JDV 2 B, L Fab light chain NIH45-46 Germ-line Light CHAIN, IG Kappa 9606
3 4HHA 1 A Fab KE5 Fab fragment KE5 9606
4 3EO0 1 A, C GC-1008 Fab Light Chain 10090
5 4DGV 2 L HCV1 Light Chain 9606
6 5IBU 1 B, L 6652 Light Chain 9606
7 4HH9 1 A, C Fab KE5, light chain KE5 Light chain 9606
8 4DGY 2 L HCV1 Light Chain 9606
9 2V7N 1 A, C, E, G IMMUNOGLOBULIN LIGHT CHAIN SYNTHETIC GENE, DERIVED FROM PHAGE DISPLAY OF THE HUMAN COMBINATORIAL ANTIBODY LIBRARY (HUCAL) FAB FRAGMENT, RESIDUES 1-255 32630
10 5DR5 2 L AbD09097 Fab light chain 9606
11 3FN0 1 L Fab Z13e1 light chain 9606
12 5I16 1 A, L FAB LIGHT CHAIN 9606
13 4FQL 2 L monoclonal antibody CR8033 light chain Fab 9606
14 5GGQ 1 L nivolumab light chain 9606
15 5K9J 2 L 56.a.09 light chain 9606
16 5TF1 2 L O2-CC Fab Light Chain 9606
17 3SO3 2 B A11 FAB light chain 9606
18 4HIE 1 A Fab 023.102 9606
19 3QEG 2 L Fab fragment of human anti-HIV antibody N12-i2, light chain Fab light chain 9606
20 4JPI 2 B, L Putative VRC01 germline Fab light chain 9606
21 1IQD 1 A HUMAN MONOCLONAL BO2C11 FAB LIGHT CHAIN 9606
22 5I1A 1 A, L CNTO388 LIGHT CHAIN 9606
23 3X3F 2 L Light chain of KMTR2 9606
24 4HIH 1 A, C Fab 023.102 9606
25 5V7R 1 L CBTAU-7.1 Fab light chain 9606
26 1DN0 1 A, C IGM-KAPPA COLD AGGLUTININ (LIGHT CHAIN) FAB FRAGMENT 9606
27 3GIZ 1 L Fab fragment of anti-CD20 antibody Ofatumumab, light chain 9606
28 3Q1S 1 L Z13e1 Fab light chain 9606
29 4QXG 2 L Fab, light chain, IgG1 Fab, light chain 9606
30 3W9D 2 B, D Antibody Fab light chain 9606
31 4HWE 2 L Fab light chain light chain 9606
32 3W9E 3 B Antibody Fab light chain 9606
33 5TFS 2 L 02-K Fab Light chain 9606
34 5WT9 2 L Light Chain of Nivolumab 9606
35 4HIJ 1 A, C Fab 023.102 light chain 9606
36 5I1C 1 L FAB LIGHT CHAIN 9606
37 5WNA 2 D, L mAb 3D3 Fab light chain 9606
38 5KZP 2 I, J, K, L HCV1-C1 Antibody Fab Light Chain 9606
39 5I1H 1 L FAB LIGHT CHAIN 9606
40 5I1J 1 L FAB LIGHT CHAIN 9606
41 4JPK 2 L Putative VRC01 germline precursor Fab light chain 9606
42 3X3G 2 L Light chain of KMTR2 9606
43 5IBT 2 L UCA Light Chain 9606
44 5JO4 2 B D80 Fab Light Chain 9606
45 5X8M 3 C durvalumab light chain 9606
46 4HII 1 A, C Fab 023.102 light chain 9606
47 4DN3 1 L CNTO888 LIGHT CHAIN 9606
48 5WNB 2 L, M mAb 3D3 Fab light chain 9606
49 4HWB 3 L Fab light chain 9606
50 6B0A 2 L 1269 antibody, light chain 9606
51 5JQD 1 A, B D80 Fab Fragment Light Chain 9606
52 4KXZ 3 I, L, M, P GC1008 Light Chain 9606
53 6CMI 2 C m102.3 light chain 9606
54 3EYQ 1 C M2J5 Fab 9606
55 2AGJ 1 L Yvo Fab, Light Chain 9606
56 3B2U 1 D, G, K, L, O, R, U, X IMC-11F8 Fab Light chain 9606
57 4DN4 1 L CNTO888 LIGHT CHAIN 9606
58 6B3S 3 D, G, K, L Necitumumab Fab Light chain 9606
59 3SDY 4 L Antibody CR8020, Light Chain 9606
60 4NP4 3 L, M bezlotoxumab light chain 9606
61 5GGT 3 L IGK@ protein 9606
62 3HI1 2 A, L F105 Light Chain 9606
63 6CMG 2 B m102.3 light chain 9606
64 1QLR 1 A, C IGM KAPPA CHAIN V-III (KAU COLD AGGLUTININ) FAB FRAGMENT 9606
65 5XMH 2 C, L YES8c light chain 9606
66 5I1G 1 L FAB LIGHT CHAIN 9606
67 5GMQ 3 C MCA1 light chain 9606
68 5TRU 1 L, l Ipilimumab Fab light chain 9606
69 4YPG 1 A, L Sifalimumab light chain 9606
70 4UTA 3 L, M BROADLY NEUTRALIZING HUMAN ANTIBODY EDE1 C8 LIGHT CHAIN FAB FRAGMENT 9606
71 3KYM 1 A, C, E, G, I, K, M, O Light Chain Li33 IgG2 9606
72 4OQT 2 L Light Chain of Li81 Fab, kappa 3 9606
73 3KYK 2 L Light Chain Li33 IgG1 9606
74 5TGB 2 B, L 02-CB Fab Light Chain 9606
75 5JOF 2 B, D, F, L VRC03 gLV light chain 9606
76 1U6A 1 L F105 LIGHT CHAIN ANTIGEN-BINDING FRAGMENT, FAB 9606
77 5K9K 2 B, L 56.a.09 Light chain 9606
78 5W4L 6 C, E Antibody N12-i3 light chain 9606
79 6B9J 3 B, L Fab vv138 Light chain 9606
80 5I17 1 A, L FAB LIGHT CHAIN 9606
81 5GGR 2 B, L light chain 9606
82 5IBL 4 D, L 6639 Light Chain 9606
83 4N90 3 E, G, I Fab light chain 9606
84 5D1Q 4 D P5 Light Chain 9606
85 3EO1 1 A, D, G, J GC-1008 Fab Light Chain 10090
86 5D1X 4 D P5 Light Chain 9606
87 5WKO 2 B, D, F, H, J, L Antibody 27F3 light chain 9606
88 3F12 1 A, C M2J1 Fab 9606
89 3B2V 1 L IMC-11F8 FAB Light chain 9606
90 5IGX 3 L germline NIH45-46 light chain 9606