Sequence Similarity Clusters for the Entities in PDB 3HI1

Entity #1 | Chains: G,J
Glycoprotein 120 protein, length: 321 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 17800
95 % 1 2 16418 Flexibility: Medium
Max RMSD: 6.7, Avg RMSD: 4.6
PDBFlex
90 % 7 13 2874
70 % 86 182 132
50 % 86 182 161
40 % 86 182 172
30 % 86 185 189
Entity #2 | Chains: A,L
F105 Light Chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27674
95 % 64 94 231 Flexibility: Low
Max RMSD: 6.2, Avg RMSD: 1.8
PDBFlex
90 % 533 783 1
70 % 1747 2576 1
50 % 3550 5226 1
40 % 4025 5890 1
30 % 4997 7330 1
Entity #3 | Chains: B,H
F105 Heavy Chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 25647
95 % 1 2 25811 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 41 67 293
70 % 1714 2532 2
50 % 3551 5226 1
40 % 4026 5890 1
30 % 4998 7330 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 6CA7 1 L PCT64_13C light chain 9606
2 5I1K 1 L FAB LIGHT CHAIN 9606
3 4JDV 2 B, L Fab light chain NIH45-46 Germ-line Light CHAIN, IG Kappa 9606
4 4HHA 1 A Fab KE5 Fab fragment KE5 9606
5 3EO0 1 A, C GC-1008 Fab Light Chain 10090
6 4DGV 2 L HCV1 Light Chain 9606
7 5IBU 1 B, L 6652 Light Chain 9606
8 4HH9 1 A, C Fab KE5, light chain KE5 Light chain 9606
9 4DGY 2 L HCV1 Light Chain 9606
10 2V7N 1 A, C, E, G IMMUNOGLOBULIN LIGHT CHAIN SYNTHETIC GENE, DERIVED FROM PHAGE DISPLAY OF THE HUMAN COMBINATORIAL ANTIBODY LIBRARY (HUCAL) FAB FRAGMENT, RESIDUES 1-255 32630
11 5CSZ 2 B, L GANTENERUMAB FAB FRAGMENT LIGHT CHAIN FAB 9606
12 5DR5 2 L AbD09097 Fab light chain 9606
13 3FN0 1 L Fab Z13e1 light chain 9606
14 5I16 1 A, L FAB LIGHT CHAIN 9606
15 4FQL 2 L monoclonal antibody CR8033 light chain Fab 9606
16 5GGQ 1 L nivolumab light chain 9606
17 5K9J 2 L 56.a.09 light chain 9606
18 5TF1 2 L O2-CC Fab Light Chain 9606
19 3SO3 2 B A11 FAB light chain 9606
20 4HIE 1 A Fab 023.102 9606
21 3QEG 2 L Fab fragment of human anti-HIV antibody N12-i2, light chain Fab light chain 9606
22 4JPI 2 B, L Putative VRC01 germline Fab light chain 9606
23 1IQD 1 A HUMAN MONOCLONAL BO2C11 FAB LIGHT CHAIN 9606
24 5I1A 1 A, L CNTO388 LIGHT CHAIN 9606
25 3X3F 2 L Light chain of KMTR2 9606
26 4HIH 1 A, C Fab 023.102 9606
27 5V7R 1 L CBTAU-7.1 Fab light chain 9606
28 1DN0 1 A, C IGM-KAPPA COLD AGGLUTININ (LIGHT CHAIN) FAB FRAGMENT 9606
29 3GIZ 1 L Fab fragment of anti-CD20 antibody Ofatumumab, light chain 9606
30 3Q1S 1 L Z13e1 Fab light chain 9606
31 4QXG 2 L Fab, light chain, IgG1 Fab, light chain 9606
32 3W9D 2 B, D Antibody Fab light chain 9606
33 4HWE 2 L Fab light chain light chain 9606
34 5TZ2 2 L C47B222 Fab Light Chain 9606
35 3W9E 3 B Antibody Fab light chain 9606
36 5TFS 2 L 02-K Fab Light chain 9606
37 5WT9 2 L Light Chain of Nivolumab 9606
38 4HIJ 1 A, C Fab 023.102 light chain 9606
39 5I1C 1 L FAB LIGHT CHAIN 9606
40 5WNA 2 D, L mAb 3D3 Fab light chain 9606
41 5KZP 2 I, J, K, L HCV1-C1 Antibody Fab Light Chain 9606
42 5I1H 1 L FAB LIGHT CHAIN 9606
43 5I1J 1 L FAB LIGHT CHAIN 9606
44 4JPK 2 L Putative VRC01 germline precursor Fab light chain 9606
45 3X3G 2 L Light chain of KMTR2 9606
46 5IBT 2 L UCA Light Chain 9606
47 5JO4 2 B D80 Fab Light Chain 9606
48 5X8M 3 C durvalumab light chain 9606
49 4HII 1 A, C Fab 023.102 light chain 9606
50 4DN3 1 L CNTO888 LIGHT CHAIN 9606
51 5WNB 2 L, M mAb 3D3 Fab light chain 9606
52 4HWB 3 L Fab light chain 9606
53 6B0A 2 L 1269 antibody, light chain 9606
54 5JQD 1 A, B D80 Fab Fragment Light Chain 9606
55 4KXZ 3 I, L, M, P GC1008 Light Chain 9606
56 6CMI 2 C m102.3 light chain 9606
57 3EYQ 1 C M2J5 Fab 9606
58 3B2U 1 D, G, K, L, O, R, U, X IMC-11F8 Fab Light chain 9606
59 4DN4 1 L CNTO888 LIGHT CHAIN 9606
60 6B3S 3 D, G, K, L Necitumumab Fab Light chain 9606
61 3SDY 4 L Antibody CR8020, Light Chain 9606
62 4NP4 3 L, M bezlotoxumab light chain 9606
63 5GGT 3 L IGK@ protein 9606
64 3HI1 2 A, L F105 Light Chain 9606
65 6CMG 2 B m102.3 light chain 9606
66 1QLR 1 A, C IGM KAPPA CHAIN V-III (KAU COLD AGGLUTININ) FAB FRAGMENT 9606
67 5XMH 2 C, L YES8c light chain 9606
68 5I1G 1 L FAB LIGHT CHAIN 9606
69 5GMQ 3 C MCA1 light chain 9606
70 6CA9 1 A, C PCT64_LMCA Fab light chain 9606
71 5TRU 1 L, l Ipilimumab Fab light chain 9606
72 4YPG 1 A, L Sifalimumab light chain 9606
73 4UTA 3 L, M BROADLY NEUTRALIZING HUMAN ANTIBODY EDE1 C8 LIGHT CHAIN FAB FRAGMENT 9606
74 3KYM 1 A, C, E, G, I, K, M, O Light Chain Li33 IgG2 9606
75 4OQT 2 L Light Chain of Li81 Fab, kappa 3 9606
76 3KYK 2 L Light Chain Li33 IgG1 9606
77 5TGB 2 B, L 02-CB Fab Light Chain 9606
78 5JOF 2 B, D, F, L VRC03 gLV light chain 9606
79 1U6A 1 L F105 LIGHT CHAIN ANTIGEN-BINDING FRAGMENT, FAB 9606
80 5K9K 2 B, L 56.a.09 Light chain 9606
81 5W4L 6 C, E Antibody N12-i3 light chain 9606
82 6B9J 3 B, L Fab vv138 Light chain 9606
83 5I17 1 A, L FAB LIGHT CHAIN 9606
84 5GGR 2 B, L light chain 9606
85 4N90 3 E, G, I Fab light chain 9606
86 5D1Q 4 D P5 Light Chain 9606
87 3EO1 1 A, D, G, J GC-1008 Fab Light Chain 10090
88 5D1X 4 D P5 Light Chain 9606
89 5WKO 2 B, D, F, H, J, L Antibody 27F3 light chain 9606
90 3F12 1 A, C M2J1 Fab 9606
91 3B2V 1 L IMC-11F8 FAB Light chain 9606
92 5IGX 3 L germline NIH45-46 light chain 9606
93 5W1K 3 C, H, M, N CR1-10 Fab light chain 9606
94 6B3M 4 D, J, N, P, U, W 70-1F02 Fab Light Chain 9606