Sequence Similarity Clusters for the Entities in PDB 3HI1

Entity #1 | Chains: G,J
Glycoprotein 120 protein, length: 321 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 19851
95 % 1 2 17611 Flexibility: Medium
Max RMSD: 6.7, Avg RMSD: 4.6
PDBFlex
90 % 7 13 2816
70 % 84 130 185
50 % 84 130 226
40 % 84 130 243
30 % 84 133 251
Entity #2 | Chains: A,L
F105 Light Chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28784
95 % 62 90 246 Flexibility: Low
Max RMSD: 6.2, Avg RMSD: 1.9
PDBFlex
90 % 546 791 2
70 % 1693 2479 1
50 % 3431 5021 1
40 % 3431 5021 1
30 % 4062 5951 1
Entity #3 | Chains: B,H
F105 Heavy Chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 28527
95 % 1 2 23772
90 % 1 2 23028
70 % 1655 2429 2
50 % 3432 5021 1
40 % 3432 5021 1
30 % 4063 5951 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3HI1 1 G, J Glycoprotein 120 11676
2 2QAD 1 A, E Envelope glycoprotein gp160 CORE WITH V3 11676