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Structure of HIV-1 gp120 (core with V3) in Complex with CD4-Binding-Site Antibody F105
Sequence Clustering and Redundancy Reduction Results
3HI1
Sequence Clusters for the Sequence Entities in PDB 3HI1
Entity #1: Chains: G,J - Glycoprotein 120 protein, length: 321 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 14818
95% 1 2 13366
90% 6 10 3145
70% 20 29 1108
50% 20 29 1165
40% 20 29 1191
30% 20 31 1087
Entity #2: Chains: A,L - F105 Light Chain protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 21805
95% 32 41 447
90% 288 413 4
70% 984 1388 3
50% 2325 3295 1
40% 2326 3296 1
30% 2698 3893 1
Entity #3: Chains: B,H - F105 Heavy Chain protein, length: 225 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 21599
95% 1 2 18152
90% 1 2 17670
70% 1120 1590 2
50% 2326 3295 1
40% 2327 3296 1
30% 2699 3893 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.