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Structure of HIV-1 gp120 (core with V3) in Complex with CD4-Binding-Site Antibody F105
Sequence Clustering and Redundancy Reduction Results
3HI1
Sequence Clusters for the Sequence Entities in PDB 3HI1
Entity #1: Chains: G,J - Glycoprotein 120 protein, length: 321 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 13882
95% 1 2 12640
90% 6 9 3126
70% 20 27 1155
50% 20 27 1218
40% 20 27 1253
30% 20 29 1153
Entity #2: Chains: A,L - F105 Light Chain protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 20489
95% 29 36 519
90% 257 365 4
70% 933 1291 3
50% 2206 3070 1
40% 2207 3071 1
30% 2563 3629 1
Entity #3: Chains: B,H - F105 Heavy Chain protein, length: 225 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 20298
95% 1 2 17150
90% 1 2 16708
70% 1063 1480 2
50% 2207 3070 1
40% 2208 3071 1
30% 2564 3629 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.