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An Information Portal to 106082 Biological Macromolecular Structures

Structure of HIV-1 gp120 (core with V3) in Complex with CD4-Binding-Site Antibody F105
Sequence Clustering and Redundancy Reduction Results
3HI1
Sequence Clusters for the Sequence Entities in PDB 3HI1
Entity #1: Chains: G,J - Glycoprotein 120 protein, length: 321 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 14369
95% 1 2 13050
90% 6 10 3049
70% 20 29 1075
50% 20 29 1140
40% 20 29 1161
30% 20 31 1061
Entity #2: Chains: A,L - F105 Light Chain protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 21193
95% 30 38 476
90% 264 377 5
70% 958 1332 3
50% 2260 3170 1
40% 2261 3171 1
30% 2631 3753 1
Entity #3: Chains: B,H - F105 Heavy Chain protein, length: 225 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 20994
95% 1 2 17703
90% 1 2 17234
70% 1088 1528 2
50% 2261 3170 1
40% 2262 3171 1
30% 2632 3753 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.