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An Information Portal to 108124 Biological Macromolecular Structures

Structure of HIV-1 gp120 (core with V3) in Complex with CD4-Binding-Site Antibody F105
Sequence Clustering and Redundancy Reduction Results
3HI1
Sequence Clusters for the Sequence Entities in PDB 3HI1
Entity #1: Chains: G,J - Glycoprotein 120 protein, length: 321 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 14687
95% 1 2 13260
90% 6 10 3123
70% 20 29 1096
50% 20 29 1156
40% 20 29 1181
30% 20 31 1076
Entity #2: Chains: A,L - F105 Light Chain protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 21603
95% 31 39 464
90% 272 389 5
70% 976 1358 3
50% 2310 3236 1
40% 2311 3237 1
30% 2681 3821 1
Entity #3: Chains: B,H - F105 Heavy Chain protein, length: 225 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 21399
95% 1 2 17990
90% 1 2 17510
70% 1113 1561 2
50% 2311 3236 1
40% 2312 3237 1
30% 2682 3821 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.