Sequence Similarity Clusters for the Entities in PDB 3HI1

Entity #1 | Chains: G,J
Glycoprotein 120 protein, length: 321 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 17547
95 % 1 2 15673
90 % 6 12 2614
70 % 80 125 171
50 % 80 125 206
40 % 80 125 230
30 % 80 128 232
Entity #2 | Chains: A,L
F105 Light Chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 25651
95 % 51 72 275
90 % 433 624 3
70 % 1211 1729 2
50 % 2925 4220 1
40 % 2925 4221 1
30 % 3410 4972 1
Entity #3 | Chains: B,H
F105 Heavy Chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 25411
95 % 1 2 21218
90 % 1 2 20607
70 % 1412 2041 1
50 % 2926 4220 1
40 % 2926 4221 1
30 % 3411 4972 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.