Sequence Similarity Clusters for the Entities in PDB 3HI1

Entity #1 | Chains: G,J
Glycoprotein 120 protein, length: 321 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 19148
95 % 1 2 17055 Flexibility: Medium
Max RMSD: 6.7, Avg RMSD: 4.6
PDBFlex
90 % 7 13 2725
70 % 82 128 181
50 % 82 128 223
40 % 82 128 241
30 % 82 131 249
Entity #2 | Chains: A,L
F105 Light Chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27880
95 % 59 85 244 Flexibility: Low
Max RMSD: 6.2, Avg RMSD: 1.9
PDBFlex
90 % 498 729 3
70 % 1609 2362 1
50 % 3259 4781 1
40 % 3259 4781 1
30 % 3824 5635 1
Entity #3 | Chains: B,H
F105 Heavy Chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 27625
95 % 1 2 23067
90 % 1 2 22365
70 % 1570 2311 2
50 % 3260 4781 1
40 % 3260 4781 1
30 % 3825 5635 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures