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An Information Portal to 110790 Biological Macromolecular Structures

Structure of HIV-1 gp120 (core with V3) in Complex with CD4-Binding-Site Antibody F105
Sequence Clustering and Redundancy Reduction Results
3HI1
Sequence Clusters for the Sequence Entities in PDB 3HI1
Entity #1: Chains: G,J - Glycoprotein 120 protein, length: 321 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 15104
95% 1 2 13614
90% 6 10 3202
70% 20 29 1119
50% 20 29 1187
40% 20 29 1214
30% 20 31 1105
Entity #2: Chains: A,L - F105 Light Chain protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 22199
95% 32 41 454
90% 296 425 4
70% 1016 1434 3
50% 2418 3425 1
40% 2419 3426 1
30% 2807 4043 1
Entity #3: Chains: B,H - F105 Heavy Chain protein, length: 225 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 21990
95% 1 2 18488
90% 1 2 17988
70% 1168 1656 1
50% 2419 3425 1
40% 2420 3426 1
30% 2808 4043 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.