Sequence Similarity Clusters for the Entities in PDB 3HI1

Entity #1 | Chains: G,J
Glycoprotein 120 protein, length: 321 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 18905
95 % 1 2 16859 Flexibility: Medium
Max RMSD: 6.7, Avg RMSD: 4.6
PDBFlex
90 % 6 12 2802
70 % 81 126 178
50 % 81 126 223
40 % 81 126 242
30 % 81 129 248
Entity #2 | Chains: A,L
F105 Light Chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27555
95 % 55 79 268 Flexibility: Low
Max RMSD: 6.0, Avg RMSD: 1.9
PDBFlex
90 % 477 701 3
70 % 1552 2287 1
50 % 3148 4633 1
40 % 3148 4633 1
30 % 3693 5461 1
Entity #3 | Chains: B,H
F105 Heavy Chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27300
95 % 1 2 22802 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 1 2 22118
70 % 1521 2244 2
50 % 3149 4633 1
40 % 3149 4633 1
30 % 3694 5461 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.