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Structure of HIV-1 gp120 (core with V3) in Complex with CD4-Binding-Site Antibody F105
Sequence Clustering and Redundancy Reduction Results
3HI1
Sequence Clusters for the Sequence Entities in PDB 3HI1
Entity #1: Chains: G,J - Glycoprotein 120 protein, length: 321 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 13988
95% 1 2 12741
90% 6 9 3150
70% 20 28 1004
50% 20 28 1078
40% 20 28 1101
30% 20 30 1025
Entity #2: Chains: A,L - F105 Light Chain protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 20647
95% 30 37 484
90% 258 366 5
70% 934 1293 3
50% 2210 3082 1
40% 2211 3083 1
30% 2569 3645 1
Entity #3: Chains: B,H - F105 Heavy Chain protein, length: 225 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 20456
95% 1 2 17280
90% 1 2 16831
70% 1065 1486 2
50% 2211 3082 1
40% 2212 3083 1
30% 2570 3645 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.