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Structure of HIV-1 gp120 (core with V3) in Complex with CD4-Binding-Site Antibody F105
Sequence Clustering and Redundancy Reduction Results
3HI1
Sequence Clusters for the Sequence Entities in PDB 3HI1
Entity #1: Chains: G,J - Glycoprotein 120 protein, length: 321 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 14520
95% 1 2 13144
90% 6 10 3082
70% 20 29 1085
50% 20 29 1145
40% 20 29 1168
30% 20 31 1066
Entity #2: Chains: A,L - F105 Light Chain protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 21366
95% 31 39 460
90% 265 379 5
70% 961 1337 3
50% 2270 3184 1
40% 2271 3185 1
30% 2641 3767 1
Entity #3: Chains: B,H - F105 Heavy Chain protein, length: 225 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 21164
95% 1 2 17816
90% 1 2 17340
70% 1093 1535 2
50% 2271 3184 1
40% 2272 3185 1
30% 2642 3767 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.