POP-OUT | CLOSE

An Information Portal to 105339 Biological Macromolecular Structures

Structure of HIV-1 gp120 (core with V3) in Complex with CD4-Binding-Site Antibody F105
Sequence Clustering and Redundancy Reduction Results
3HI1
Sequence Clusters for the Sequence Entities in PDB 3HI1
Entity #1: Chains: G,J - Glycoprotein 120 protein, length: 321 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 14251
95% 1 2 12950
90% 6 9 3269
70% 20 28 1097
50% 20 28 1169
40% 20 28 1188
30% 20 30 1107
Entity #2: Chains: A,L - F105 Light Chain protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 21023
95% 30 37 490
90% 263 374 5
70% 952 1320 3
50% 2248 3142 1
40% 2249 3143 1
30% 2613 3719 1
Entity #3: Chains: B,H - F105 Heavy Chain protein, length: 225 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 2 20826
95% 1 2 17571
90% 1 2 17106
70% 1082 1514 2
50% 2249 3142 1
40% 2250 3143 1
30% 2614 3719 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.