Sequence Similarity Clusters for the Entities in PDB 3HFM

Entity #1 | Chains: L
HYHEL-10 IGG1 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 14 4579
95 % 27 31 1504 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.7
PDBFlex
90 % 34 40 1093
70 % 2166 2637 1
50 % 4415 5362 1
40 % 4964 6051 1
30 % 6183 7514 1
Entity #2 | Chains: H
HYHEL-10 IGG1 FAB (HEAVY CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 66406
95 % 4 4 10602 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.8
PDBFlex
90 % 14 14 2897
70 % 2139 2600 2
50 % 4416 5362 1
40 % 4965 6051 1
30 % 6184 7514 1
Entity #3 | Chains: Y
HEN EGG WHITE LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 706 747 3
95 % 723 764 3 Flexibility: No
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 738 781 5
70 % 957 1005 7
50 % 965 1014 8
40 % 999 1049 10
30 % 999 1049 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures