Sequence Similarity Clusters for the Entities in PDB 3HFM

Entity #1 | Chains: L
HYHEL-10 IGG1 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 14 4449
95 % 27 31 1443 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.7
PDBFlex
90 % 34 40 1055
70 % 2127 2576 1
50 % 4325 5226 1
40 % 4859 5890 1
30 % 6062 7330 1
Entity #2 | Chains: H
HYHEL-10 IGG1 FAB (HEAVY CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 65050
95 % 4 4 10315 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.8
PDBFlex
90 % 14 14 2831
70 % 2094 2532 2
50 % 4326 5226 1
40 % 4860 5890 1
30 % 6063 7330 1
Entity #3 | Chains: Y
HEN EGG WHITE LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 679 719 2
95 % 696 736 2 Flexibility: No
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 711 753 4
70 % 929 976 6
50 % 937 985 7
40 % 971 1020 9
30 % 971 1020 18

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures