Sequence Similarity Clusters for the Entities in PDB 3HFM

Entity #1 | Chains: L
HYHEL-10 IGG1 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 39407
95 % 24 25 1809 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.6
PDBFlex
90 % 31 33 1273
70 % 1551 1822 2
50 % 3784 4489 1
40 % 3784 4489 1
30 % 4477 5290 1
Entity #2 | Chains: H
HYHEL-10 IGG1 FAB (HEAVY CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58517
95 % 2 2 30000 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.8
PDBFlex
90 % 12 12 3462
70 % 1829 2172 1
50 % 3785 4489 1
40 % 3785 4489 1
30 % 4478 5290 1
Entity #3 | Chains: Y
HEN EGG WHITE LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 604 640 3
95 % 656 693 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 671 710 5
70 % 883 927 7
50 % 890 935 7
40 % 923 969 11
30 % 923 969 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.