Sequence Similarity Clusters for the Entities in PDB 3H54

Entity #1 | Chains: A,B
Alpha-N-acetylgalactosaminidase protein, length: 400 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 4032
95 % 7 7 4838 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.2
PDBFlex
90 % 7 7 4862
70 % 8 9 4096
50 % 8 9 3964
40 % 11 26 1179
30 % 13 28 1121

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures