Sequence Similarity Clusters for the Entities in PDB 3GZN

Entity #1 | Chains: A,C
NEDD8-activating enzyme E1 regulatory subunit protein, length: 534 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 14446
95 % 6 9 2151 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 6 9 2203
70 % 6 9 2189
50 % 6 9 2170
40 % 6 9 2164
30 % 6 9 2071
Entity #2 | Chains: B,D
NEDD8-activating enzyme E1 catalytic subunit protein, length: 463 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 11409
95 % 5 8 2217 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.5
PDBFlex
90 % 5 8 2275
70 % 5 8 2272
50 % 5 8 2251
40 % 5 8 2241
30 % 5 8 2137
Entity #3 | Chains: I,J
NEDD8 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 13 1745
95 % 10 17 1349 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.3
PDBFlex
90 % 10 17 1376
70 % 10 18 1341
50 % 326 462 11
40 % 339 486 16
30 % 621 1038 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.