Sequence Similarity Clusters for the Entities in PDB 3GZN

Entity #1 | Chains: A,C
NEDD8-activating enzyme E1 regulatory subunit protein, length: 534 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 14679
95 % 6 9 2185 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 6 9 2238
70 % 6 9 2230
50 % 6 9 2211
40 % 6 9 2206
30 % 6 9 2103
Entity #2 | Chains: B,D
NEDD8-activating enzyme E1 catalytic subunit protein, length: 463 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 11585
95 % 5 8 2255 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.5
PDBFlex
90 % 5 8 2316
70 % 5 8 2319
50 % 5 8 2299
40 % 5 8 2288
30 % 5 8 2173
Entity #3 | Chains: I,J
NEDD8 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 13 1772
95 % 10 17 1368 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.3
PDBFlex
90 % 10 17 1395
70 % 10 18 1357
50 % 328 467 11
40 % 341 491 16
30 % 624 1044 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures