Sequence Similarity Clusters for the Entities in PDB 3GZN

Entity #1 | Chains: A,C
NEDD8-activating enzyme E1 regulatory subunit protein, length: 534 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 15030
95 % 6 9 2243 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 6 9 2301
70 % 6 9 2293
50 % 6 9 2273
40 % 6 9 2261
30 % 6 9 2153
Entity #2 | Chains: B,D
NEDD8-activating enzyme E1 catalytic subunit protein, length: 463 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 11866
95 % 5 8 2326 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.5
PDBFlex
90 % 5 8 2387
70 % 5 8 2393
50 % 5 8 2371
40 % 5 8 2345
30 % 5 8 2230
Entity #3 | Chains: I,J
NEDD8 protein, length: 82 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 13 1830
95 % 10 17 1410 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.3
PDBFlex
90 % 10 17 1436
70 % 10 18 1383
50 % 342 481 11
40 % 355 505 15
30 % 640 1062 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures