Sequence Similarity Clusters for the Entities in PDB 3GKR

Entity #1 | Chains: A
FemX protein, length: 336 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 13305
95 % 1 7 10983 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 1 7 10824
70 % 1 7 10234
50 % 1 7 9215
40 % 1 7 8344
30 % 1 7 7224
Entity #2 | Chains: B
UDP-MurNAc-peptide protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures