Sequence Similarity Clusters for the Entities in PDB 3FXI

Entity #1 | Chains: A,B
Toll-like receptor 4 protein, length: 605 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 32282
95 % 2 2 15990 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 2 2 15693
70 % 2 2 14713
50 % 9 9 3892
40 % 9 9 3736
30 % 20 21 1549
Entity #2 | Chains: C,D
Lymphocyte antigen 96 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 6903
95 % 5 6 7492 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.1
PDBFlex
90 % 5 6 7454
70 % 5 6 7245
50 % 11 12 3042
40 % 11 12 2990
30 % 11 12 2797

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures