Sequence Similarity Clusters for the Entities in PDB 3FXI

Entity #1 | Chains: A,B
Toll-like receptor 4 protein, length: 605 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 31651
95 % 2 2 15669 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 2 2 15385
70 % 2 2 14434
50 % 9 9 3801
40 % 9 9 3657
30 % 20 21 1515
Entity #2 | Chains: C,D
Lymphocyte antigen 96 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 6765
95 % 5 6 7343 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.1
PDBFlex
90 % 5 6 7303
70 % 5 6 7105
50 % 11 12 2980
40 % 11 12 2935
30 % 11 12 2748

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures