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An Information Portal to 109274 Biological Macromolecular Structures

Structural insight into the quinolone-DNA cleavage complex of type IIA topoisomerases
Sequence Clustering and Redundancy Reduction Results
3FOE
Sequence Clusters for the Sequence Entities in PDB 3FOE
Entity #1: Chains: A,B - DNA topoisomerase 4 subunit A protein, length: 496 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 14 1084
95% 13 14 1483
90% 13 14 1518
70% 13 14 1544
50% 24 25 779
40% 24 25 807
30% 24 25 805
Entity #2: Chains: C,D - DNA topoisomerase 4 subunit B protein, length: 268 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 12 1428
95% 12 12 1915
90% 12 12 1955
70% 12 12 1969
50% 12 12 1996
40% 15 15 1687
30% 15 15 1617
Entity #3: Chains: E - DNA (5'-D(P*AP*CP*CP*AP*AP*GP*GP*TP*CP*AP*TP*GP*AP*AP*T)-3') dna, length: 15 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: F - DNA (5'-D(P*AP*GP*TP*CP*AP*TP*TP*CP*AP*TP*GP*AP*CP*CP*TP*TP*GP*GP*T)-3') dna, length: 19 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: G - DNA (5'-D(P*CP*TP*GP*TP*TP*TP*TP*AP*CP*GP*TP*GP*CP*AP*T)-3') dna, length: 15 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #6: Chains: H - DNA (5'-D(P*GP*AP*CP*TP*AP*TP*GP*CP*AP*CP*GP*TP*AP*AP*AP*AP*CP*AP*G)-3') dna, length: 19 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.