Sequence Similarity Clusters for the Entities in PDB 3FEX

Entity #1 | Chains: A
Nuclear cap-binding protein subunit 1 protein, length: 790 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 16007
95 % 6 6 7984 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 6 6 7940
70 % 6 6 7649
50 % 6 6 7047
40 % 6 6 6556
30 % 6 6 5851
Entity #2 | Chains: B
Nuclear cap-binding protein subunit 2 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 9226
95 % 7 7 9387 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 0.9
PDBFlex
90 % 7 7 9285
70 % 7 7 8855
50 % 7 7 8002
40 % 7 7 7348
30 % 7 7 6488
Entity #3 | Chains: C
Importin subunit alpha-2 protein, length: 467 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 14195
95 % 5 5 9912 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.1
PDBFlex
90 % 71 71 634
70 % 71 71 672
50 % 93 93 463
40 % 96 96 489
30 % 96 96 491

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.