Sequence Similarity Clusters for the Entities in PDB 3FEX

Entity #1 | Chains: A
Nuclear cap-binding protein subunit 1 protein, length: 790 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 8662
95 % 11 11 2696
90 % 11 11 2673
70 % 11 11 2655
50 % 11 11 2632
40 % 11 11 2567
30 % 11 11 2409
Entity #2 | Chains: B
Nuclear cap-binding protein subunit 2 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 9 2914
95 % 9 9 3219 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 0.9
PDBFlex
90 % 9 9 3276
70 % 9 9 3231
50 % 9 9 3171
40 % 9 9 3075
30 % 9 9 2836
Entity #3 | Chains: C
Importin subunit alpha-2 protein, length: 467 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 14509
95 % 6 6 10077 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.3
PDBFlex
90 % 78 78 610
70 % 78 78 654
50 % 101 102 452
40 % 105 106 471
30 % 106 107 461

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures