Sequence Similarity Clusters for the Entities in PDB 3F1P

Entity #1 | Chains: A
Endothelial PAS domain-containing protein 1 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 9 6848
95 % 1 14 4567 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 1 14 4590
70 % 1 15 4253
50 % 2 16 3568
40 % 2 16 3438
30 % 2 40 1222
Entity #2 | Chains: B
Aryl hydrocarbon receptor nuclear translocator protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 9 5922
95 % 1 19 2641 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 1 19 2695
70 % 1 19 2681
50 % 1 19 2647
40 % 1 19 2596
30 % 3 40 1222

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures