Sequence Similarity Clusters for the Entities in PDB 3F1O

Entity #1 | Chains: A
Endothelial PAS domain-containing protein 1 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 9 6712
95 % 5 14 4506 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 5 14 4549
70 % 5 15 4026
50 % 6 16 3454
40 % 6 16 3310
30 % 13 40 1246
Entity #2 | Chains: B
Aryl hydrocarbon receptor nuclear translocator protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 9 6333
95 % 6 19 2555 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 6 19 2624
70 % 6 19 2606
50 % 6 19 2672
40 % 6 20 2477
30 % 14 40 1246

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures