Sequence Similarity Clusters for the Entities in PDB 3F1O

Entity #1 | Chains: A
Endothelial PAS domain-containing protein 1 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 9 6777
95 % 5 14 4526 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 5 14 4552
70 % 5 15 4222
50 % 6 16 3537
40 % 6 16 3414
30 % 13 40 1213
Entity #2 | Chains: B
Aryl hydrocarbon receptor nuclear translocator protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 9 5862
95 % 6 19 2616 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 6 19 2670
70 % 6 19 2656
50 % 6 19 2618
40 % 6 19 2569
30 % 14 40 1213

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures