Sequence Similarity Clusters for the Entities in PDB 3EUB

Entity #1 | Chains: 2,A,J,S
Xanthine dehydrogenase/oxidase protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 2561
95 % 8 9 3204 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 8 9 3252
70 % 8 9 3213
50 % 8 9 3129
40 % 8 9 3048
30 % 8 9 2858
Entity #2 | Chains: 3,B,K,T
Xanthine dehydrogenase/oxidase protein, length: 305 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 2457
95 % 8 9 3097 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 8 9 3145
70 % 8 9 3124
50 % 8 9 3051
40 % 8 9 2990
30 % 8 9 2802
Entity #3 | Chains: 4,C,L,U
Xanthine dehydrogenase/oxidase protein, length: 762 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 11 2062
95 % 10 11 2646 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 10 11 2696
70 % 10 11 2680
50 % 10 11 2643
40 % 10 17 1216
30 % 10 17 1190

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures