Sequence Similarity Clusters for the Entities in PDB 3EUB

Entity #1 | Chains: 2,A,J,S
Xanthine dehydrogenase/oxidase protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 2495
95 % 8 9 3139 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 8 9 3184
70 % 8 9 3155
50 % 8 9 3081
40 % 8 9 3007
30 % 8 9 2821
Entity #2 | Chains: 3,B,K,T
Xanthine dehydrogenase/oxidase protein, length: 305 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 2391
95 % 8 9 3035 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 8 9 3083
70 % 8 9 3069
50 % 8 9 3005
40 % 8 9 2951
30 % 8 9 2767
Entity #3 | Chains: 4,C,L,U
Xanthine dehydrogenase/oxidase protein, length: 762 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 11 2017
95 % 10 11 2595 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 10 11 2641
70 % 10 11 2626
50 % 10 11 2592
40 % 10 17 1197
30 % 10 17 1169

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.