Sequence Similarity Clusters for the Entities in PDB 3EUB

Entity #1 | Chains: 2,A,J,S
Xanthine dehydrogenase/oxidase protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 3014
95 % 8 9 3335 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 8 9 3394
70 % 8 9 3329
50 % 8 9 3255
40 % 8 9 3136
30 % 22 23 1281
Entity #2 | Chains: 3,B,K,T
Xanthine dehydrogenase/oxidase protein, length: 305 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 2849
95 % 8 9 3167 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 8 9 3219
70 % 8 9 3175
50 % 8 9 3128
40 % 8 9 3034
30 % 8 9 2799
Entity #3 | Chains: 4,C,L,U
Xanthine dehydrogenase/oxidase protein, length: 762 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 11 2514
95 % 10 11 2808 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 10 11 2866
70 % 10 11 2833
50 % 10 11 2798
40 % 10 17 1260
30 % 10 17 1259

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures