Sequence Similarity Clusters for the Entities in PDB 3EOY

Entity #1 | Chains: A,B,C,D,E,F
Outer capsid protein sigma-1 protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 2915
95 % 4 4 2576 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 4 4 2632
70 % 4 4 2624
50 % 4 4 2588
40 % 4 4 2540
30 % 4 4 2406
Entity #2 | Chains: G,H,I,J,K,L
Junctional adhesion molecule A protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 7498
95 % 2 2 8069 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 2 2 8017
70 % 2 2 7761
50 % 2 2 7142
40 % 2 2 6636
30 % 2 2 5917

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures