Sequence Similarity Clusters for the Entities in PDB 3EOY

Entity #1 | Chains: A,B,C,D,E,F
Outer capsid protein sigma-1 protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 2812
95 % 4 4 2502 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 4 4 2555
70 % 4 4 2547
50 % 4 4 2513
40 % 4 4 2468
30 % 4 4 2346
Entity #2 | Chains: G,H,I,J,K,L
Junctional adhesion molecule A protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 7292
95 % 2 2 7843 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 2 2 7801
70 % 2 2 7528
50 % 2 2 6928
40 % 2 2 6443
30 % 2 2 5744

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.