Sequence Similarity Clusters for the Entities in PDB 3E1I

Entity #1 | Chains: A,D
Fibrinogen alpha chain protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 17 1221
95 % 1 17 1641 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 1 17 1665
70 % 1 17 1711
50 % 1 17 1754
40 % 1 17 1769
30 % 1 17 1801
Entity #2 | Chains: B,E
Fibrinogen beta chain protein, length: 328 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37949
95 % 1 28 991 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 1 28 1026
70 % 1 28 1053
50 % 1 30 977
40 % 1 30 1023
30 % 1 61 499
Entity #3 | Chains: C,F
Fibrinogen gamma chain protein, length: 319 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 23 893
95 % 1 29 946 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.0
PDBFlex
90 % 1 29 982
70 % 1 29 1016
50 % 1 31 945
40 % 1 31 987
30 % 2 61 499
Entity #4 | Chains: G,H
Gly-His-Arg-Pro-amide protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures