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An Information Portal to 105097 Biological Macromolecular Structures

MDT Protein
Sequence Clustering and Redundancy Reduction Results
3DNV
Sequence Clusters for the Sequence Entities in PDB 3DNV
Entity #1: Chains: A - Protein hipA protein, length: 440 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 10851
95% 9 11 3388
90% 9 11 3425
70% 9 11 3402
50% 9 11 3343
40% 9 11 3219
30% 9 11 2986
Entity #2: Chains: B - HTH-type transcriptional regulator hipB protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 18279
95% 2 3 15789
90% 2 3 15389
70% 2 3 14266
50% 2 3 12513
40% 2 3 11234
30% 2 3 9705
Entity #3: Chains: T - DNA (5'-D(*DAP*DCP*DTP*DAP*DTP*DCP*DCP*DCP*DCP*DTP*DTP*DAP*DAP*DGP*DGP*DGP*DGP*DAP*DTP*DAP*DG)-3') dna, length: 21 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.