Sequence Similarity Clusters for the Entities in PDB 3DNV

Entity #1 | Chains: A
Protein hipA protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 6748
95 % 9 13 3316 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 1.8
PDBFlex
90 % 9 13 3362
70 % 9 13 3321
50 % 9 13 3249
40 % 9 13 3149
30 % 9 13 2957
Entity #2 | Chains: B
HTH-type transcriptional regulator hipB protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 23404
95 % 2 4 12918 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 2 4 12710
70 % 2 4 11933
50 % 2 4 10665
40 % 2 4 9677
30 % 2 4 8422
Entity #3 | Chains: T
DNA (5'-D(*DAP*DCP*DTP*DAP*DTP*DCP*DCP*DCP*DCP*DTP*DTP*DAP*DAP*DGP*DGP*DGP*DGP*DAP*DTP*DAP*DG)-3') dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.