Sequence Similarity Clusters for the Entities in PDB 3DNV

Entity #1 | Chains: A
Protein hipA protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 8427
95 % 9 12 3293
90 % 9 12 3334
70 % 9 12 3323
50 % 9 12 3231
40 % 9 12 3125
30 % 9 12 2921
Entity #2 | Chains: B
HTH-type transcriptional regulator hipB protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 20400
95 % 2 3 17521
90 % 2 3 17043
70 % 2 3 15748
50 % 2 3 13775
40 % 2 3 12337
30 % 2 3 10603
Entity #3 | Chains: T
DNA (5'-D(*DAP*DCP*DTP*DAP*DTP*DCP*DCP*DCP*DCP*DTP*DTP*DAP*DAP*DGP*DGP*DGP*DGP*DAP*DTP*DAP*DG)-3') dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.