Sequence Similarity Clusters for the Entities in PDB 3DNV

Entity #1 | Chains: A
Protein hipA protein, length: 440 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 12 3827
95 % 9 13 3618 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 1.7
PDBFlex
90 % 9 13 3691
70 % 9 13 3625
50 % 9 13 3543
40 % 9 13 3390
30 % 10 16 2503
Entity #2 | Chains: B
HTH-type transcriptional regulator hipB protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 17374
95 % 2 4 11563 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 2 4 11399
70 % 2 4 10767
50 % 2 4 9683
40 % 2 4 8773
30 % 2 4 7574
Entity #3 | Chains: T
DNA (5'-D(*DAP*DCP*DTP*DAP*DTP*DCP*DCP*DCP*DCP*DTP*DTP*DAP*DAP*DGP*DGP*DGP*DGP*DAP*DTP*DAP*DG)-3') dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures