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MDT Protein
Sequence Clustering and Redundancy Reduction Results
3DNV
Sequence Clusters for the Sequence Entities in PDB 3DNV
Entity #1: Chains: A - Protein hipA protein, length: 440 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 10574
95% 9 11 3247
90% 9 11 3288
70% 9 11 3282
50% 9 11 3257
40% 9 11 3144
30% 9 11 2913
Entity #2: Chains: B - HTH-type transcriptional regulator hipB protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 17819
95% 2 3 15424
90% 2 3 15046
70% 2 3 13965
50% 2 3 12247
40% 2 3 10990
30% 2 3 9508
Entity #3: Chains: T - DNA (5'-D(*DAP*DCP*DTP*DAP*DTP*DCP*DCP*DCP*DCP*DTP*DTP*DAP*DAP*DGP*DGP*DGP*DGP*DAP*DTP*DAP*DG)-3') dna, length: 21 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.