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An Information Portal to 110790 Biological Macromolecular Structures

MDT Protein
Sequence Clustering and Redundancy Reduction Results
3DNV
Sequence Clusters for the Sequence Entities in PDB 3DNV
Entity #1: Chains: A - Protein hipA protein, length: 440 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 5 7995
95% 9 12 3082
90% 9 12 3119
70% 9 12 3131
50% 9 12 3084
40% 9 12 2980
30% 9 12 2786
Entity #2: Chains: B - HTH-type transcriptional regulator hipB protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 19336
95% 2 3 16638
90% 2 3 16213
70% 2 3 15040
50% 2 3 13177
40% 2 3 11833
30% 2 3 10188
Entity #3: Chains: T - DNA (5'-D(*DAP*DCP*DTP*DAP*DTP*DCP*DCP*DCP*DCP*DTP*DTP*DAP*DAP*DGP*DGP*DGP*DGP*DAP*DTP*DAP*DG)-3') dna, length: 21 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.