Sequence Similarity Clusters for the Entities in PDB 3DFX

Entity #1 | Chains: X
DNA (5'-D(*DTP*DTP*DGP*DAP*DTP*DAP*DAP*DAP*DTP*DCP*DAP*DGP*DAP*DGP*DAP*DTP*DAP*DAP*DCP*DC)-3') dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: Y
DNA (5'-D(*DAP*DAP*DGP*DGP*DTP*DTP*DAP*DTP*DCP*DTP*DCP*DTP*DGP*DAP*DTP*DTP*DTP*DAP*DTP*DC)-3') dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
Trans-acting T-cell-specific transcription factor GATA-3 protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 19510
95 % 1 2 17891 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 1 2 17443
70 % 1 7 8539
50 % 1 7 7811
40 % 1 7 7173
30 % 1 7 6260

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3DFX 3 A, B Trans-acting T-cell-specific transcription factor GATA-3 UNP residues 308-370 10090
2 3DFV 3 C, D Trans-acting T-cell-specific transcription factor GATA-3 UNP residues 308-370 10090
3 2M9W 1 A Transcription factor GATA-4 GATA-type 2 zinc finger residues 262-321 9606
4 2GAT 3 A ERYTHROID TRANSCRIPTION FACTOR GATA-1 C-TERMINAL DOMAIN 9031
5 3GAT 3 A ERYTHROID TRANSCRIPTION FACTOR GATA-1 C-TERMINAL DOMAIN 9031
6 1GAT 3 A ERYTHROID TRANSCRIPTION FACTOR GATA-1 9031
7 1GAU 3 A ERYTHROID TRANSCRIPTION FACTOR GATA-1 9031