Sequence Similarity Clusters for the Entities in PDB 3CQZ

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 115 221
95 % 3 115 308
90 % 3 115 325
70 % 3 115 364
50 % 3 126 371
40 % 3 126 402
30 % 3 126 402
Entity #10 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 133 180
95 % 4 133 242
90 % 4 133 254
70 % 4 133 287
50 % 4 133 323
40 % 4 133 343
30 % 4 133 347
Entity #11 | Chains: M
ALPHA-AMANITIN protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 116 219
95 % 3 117 297
90 % 3 117 313
70 % 3 117 351
50 % 3 128 361
40 % 3 136 327
30 % 3 139 330
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 112 225
95 % 3 112 313
90 % 3 112 332
70 % 3 112 369
50 % 3 114 419
40 % 3 114 455
30 % 3 114 451
Entity #4 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 138 174
95 % 5 138 231
90 % 5 138 243
70 % 5 138 277
50 % 5 140 304
40 % 5 149 299
30 % 5 149 312
Entity #5 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 132 182
95 % 4 132 246
90 % 4 132 257
70 % 4 132 289
50 % 4 144 296
40 % 4 144 312
30 % 4 144 324
Entity #6 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 137 177
95 % 4 138 232
90 % 4 138 244
70 % 4 138 279
50 % 4 138 312
40 % 4 138 326
30 % 4 150 309
Entity #7 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 116 220
95 % 3 116 307
90 % 3 116 324
70 % 3 116 362
50 % 3 118 407
40 % 3 118 438
30 % 3 121 428
Entity #8 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 137 178
95 % 4 137 234
90 % 4 137 247
70 % 4 148 262
50 % 4 156 255
40 % 4 156 275
30 % 4 156 280
Entity #9 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 117 216
95 % 3 117 300
90 % 3 117 317
70 % 3 117 354
50 % 3 117 415
40 % 3 119 435
30 % 3 119 436

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.