Sequence Similarity Clusters for the Entities in PDB 3CQZ

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 114 212
95 % 3 114 299
90 % 3 114 313
70 % 3 114 342
50 % 3 124 339
40 % 3 124 369
30 % 3 124 373
Entity #10 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 127 177
95 % 4 127 247
90 % 4 127 255
70 % 4 127 286
50 % 4 127 320
40 % 4 127 343
30 % 4 127 352
Entity #11 | Chains: M
ALPHA-AMANITIN protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 115 209
95 % 3 116 289
90 % 3 116 301
70 % 3 116 332
50 % 3 126 334
40 % 3 134 323
30 % 3 137 326
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 111 214
95 % 3 111 308
90 % 3 111 322
70 % 3 111 351
50 % 3 112 404
40 % 3 112 441
30 % 3 112 434
Entity #4 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 132 169
95 % 5 132 232
90 % 5 132 243
70 % 5 132 278
50 % 5 133 304
40 % 5 142 302
30 % 5 142 312
Entity #5 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 126 178
95 % 4 126 249
90 % 4 126 257
70 % 4 126 289
50 % 4 137 298
40 % 4 137 315
30 % 4 137 329
Entity #6 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 131 172
95 % 4 132 235
90 % 4 132 246
70 % 4 132 279
50 % 4 132 309
40 % 4 132 333
30 % 4 143 310
Entity #7 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 115 210
95 % 3 115 298
90 % 3 115 311
70 % 3 115 341
50 % 3 116 385
40 % 3 116 420
30 % 3 119 399
Entity #8 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 131 173
95 % 4 131 237
90 % 4 131 247
70 % 4 141 263
50 % 4 149 258
40 % 4 149 280
30 % 4 149 289
Entity #9 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 116 208
95 % 3 116 294
90 % 3 116 307
70 % 3 116 337
50 % 3 116 392
40 % 3 117 410
30 % 3 117 409

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.