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Crystal structure of 10 subunit RNA polymerase II in complex with the inhibitor alpha-amanitin
Sequence Clustering and Redundancy Reduction Results
3CQZ
Sequence Clusters for the Sequence Entities in PDB 3CQZ
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 96 209
95% 3 96 295
90% 3 96 313
70% 3 96 329
50% 3 97 358
40% 3 97 379
30% 3 97 389
Entity #10: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 101 193
95% 4 101 275
90% 4 101 289
70% 4 101 306
50% 4 101 344
40% 4 101 367
30% 4 101 378
Entity #11: Chains: M - ALPHA-AMANITIN protein, length: 8 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 97 206
95% 3 98 287
90% 3 98 305
70% 3 98 321
50% 3 99 349
40% 3 107 316
30% 3 107 330
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 96 211
95% 3 96 297
90% 3 96 315
70% 3 96 330
50% 3 97 361
40% 3 97 382
30% 3 97 392
Entity #4: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 103 186
95% 5 103 263
90% 5 103 276
70% 5 103 298
50% 5 104 325
40% 5 104 348
30% 5 104 356
Entity #5: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 100 195
95% 4 100 280
90% 4 100 294
70% 4 100 313
50% 4 102 335
40% 4 102 360
30% 4 102 370
Entity #6: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 102 189
95% 4 103 265
90% 4 103 278
70% 4 103 299
50% 4 103 336
40% 4 103 361
30% 4 105 351
Entity #7: Chains: I - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 97 207
95% 3 97 293
90% 3 97 311
70% 3 97 326
50% 3 98 357
40% 3 98 378
30% 3 98 388
Entity #8: Chains: J - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 102 191
95% 4 102 269
90% 4 102 284
70% 4 103 295
50% 4 111 278
40% 4 111 306
30% 4 111 322
Entity #9: Chains: K - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 98 205
95% 3 98 290
90% 3 98 308
70% 3 98 323
50% 3 98 364
40% 3 99 373
30% 3 99 383
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.