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Crystal structure of 10 subunit RNA polymerase II in complex with the inhibitor alpha-amanitin
Sequence Clustering and Redundancy Reduction Results
3CQZ
Sequence Clusters for the Sequence Entities in PDB 3CQZ
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 96 202
95% 3 96 286
90% 3 96 299
70% 3 96 315
50% 3 97 336
40% 3 97 359
30% 3 97 372
Entity #10: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 101 185
95% 4 101 266
90% 4 101 277
70% 4 101 294
50% 4 101 325
40% 4 101 348
30% 4 101 359
Entity #11: Chains: M - ALPHA-AMANITIN protein, length: 8 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 97 200
95% 3 98 278
90% 3 98 291
70% 3 98 308
50% 3 99 329
40% 3 107 301
30% 3 107 319
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 96 204
95% 3 96 287
90% 3 96 300
70% 3 96 317
50% 3 97 339
40% 3 97 361
30% 3 97 374
Entity #4: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 103 175
95% 5 103 248
90% 5 103 259
70% 5 103 285
50% 5 104 301
40% 5 104 327
30% 5 104 339
Entity #5: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 100 187
95% 4 100 270
90% 4 100 281
70% 4 100 300
50% 4 102 315
40% 4 102 337
30% 4 102 349
Entity #6: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 102 178
95% 4 103 249
90% 4 103 261
70% 4 103 286
50% 4 103 316
40% 4 103 338
30% 4 105 336
Entity #7: Chains: I - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 97 201
95% 3 97 285
90% 3 97 298
70% 3 97 314
50% 3 98 333
40% 3 98 356
30% 3 98 369
Entity #8: Chains: J - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 102 180
95% 4 102 258
90% 4 102 268
70% 4 103 278
50% 4 103 310
40% 4 111 294
30% 4 111 311
Entity #9: Chains: K - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 98 199
95% 3 98 281
90% 3 98 294
70% 3 98 310
50% 3 98 345
40% 3 99 353
30% 3 99 365
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.