Sequence Similarity Clusters for the Entities in PDB 3CQZ

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 115 229
95 % 3 115 321
90 % 3 115 339
70 % 3 120 356
50 % 3 132 368
40 % 3 132 393
30 % 3 132 397
Entity #10 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 138 183
95 % 4 138 244
90 % 4 138 259
70 % 4 138 289
50 % 4 143 313
40 % 4 143 328
30 % 4 143 336
Entity #11 | Chains: M
ALPHA-AMANITIN protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 116 226
95 % 3 117 313
90 % 3 117 329
70 % 3 124 339
50 % 3 134 357
40 % 3 142 324
30 % 3 145 330
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 112 232
95 % 3 112 326
90 % 3 112 345
70 % 3 112 378
50 % 3 114 439
40 % 3 114 470
30 % 3 114 471
Entity #4 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 143 172
95 % 5 143 233
90 % 5 143 248
70 % 5 148 271
50 % 5 150 291
40 % 5 160 284
30 % 5 160 293
Entity #5 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 137 185
95 % 4 137 247
90 % 4 137 262
70 % 4 137 294
50 % 4 155 279
40 % 4 155 298
30 % 4 155 307
Entity #6 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 142 174
95 % 4 143 234
90 % 4 143 249
70 % 4 143 280
50 % 4 148 296
40 % 4 148 311
30 % 4 161 292
Entity #7 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 116 228
95 % 3 116 320
90 % 3 116 338
70 % 3 121 355
50 % 3 123 406
40 % 3 123 436
30 % 3 126 425
Entity #8 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 142 175
95 % 4 142 236
90 % 4 142 250
70 % 4 159 250
50 % 4 167 246
40 % 4 167 264
30 % 4 167 270
Entity #9 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 117 224
95 % 3 117 315
90 % 3 117 333
70 % 3 117 369
50 % 3 122 416
40 % 3 124 434
30 % 3 124 435

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.