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Crystal structure of 10 subunit RNA polymerase II in complex with the inhibitor alpha-amanitin
Sequence Clustering and Redundancy Reduction Results
3CQZ
Sequence Clusters for the Sequence Entities in PDB 3CQZ
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 108 198
95% 3 108 274
90% 3 108 288
70% 3 108 310
50% 3 109 330
40% 3 109 360
30% 3 109 366
Entity #10: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 113 187
95% 4 113 254
90% 4 113 265
70% 4 113 291
50% 4 113 318
40% 4 113 350
30% 4 113 357
Entity #11: Chains: M - ALPHA-AMANITIN protein, length: 8 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 109 195
95% 3 110 267
90% 3 110 280
70% 3 110 302
50% 3 111 321
40% 3 119 308
30% 3 119 319
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 108 200
95% 3 108 277
90% 3 108 291
70% 3 108 311
50% 3 109 331
40% 3 109 364
30% 3 109 368
Entity #4: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 115 171
95% 5 115 240
90% 5 115 250
70% 5 115 279
50% 5 116 305
40% 5 116 335
30% 5 116 342
Entity #5: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 112 188
95% 4 112 256
90% 4 112 268
70% 4 112 294
50% 4 114 313
40% 4 114 341
30% 4 114 351
Entity #6: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 114 180
95% 4 115 242
90% 4 115 252
70% 4 115 282
50% 4 115 314
40% 4 115 342
30% 4 117 336
Entity #7: Chains: I - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 109 196
95% 3 109 273
90% 3 109 287
70% 3 109 309
50% 3 110 329
40% 3 110 359
30% 3 110 365
Entity #8: Chains: J - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 114 184
95% 4 114 252
90% 4 114 262
70% 4 115 273
50% 4 123 270
40% 4 123 296
30% 4 123 311
Entity #9: Chains: K - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 110 194
95% 3 110 271
90% 3 110 284
70% 3 110 305
50% 3 110 334
40% 3 111 354
30% 3 111 363
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.