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Crystal structure of 10 subunit RNA polymerase II in complex with the inhibitor alpha-amanitin
Sequence Clustering and Redundancy Reduction Results
3CQZ
Sequence Clusters for the Sequence Entities in PDB 3CQZ
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 101 206
95% 3 101 290
90% 3 101 305
70% 3 101 324
50% 3 102 350
40% 3 102 377
30% 3 102 382
Entity #10: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 106 190
95% 4 106 269
90% 4 106 283
70% 4 106 301
50% 4 106 330
40% 4 106 360
30% 4 106 367
Entity #11: Chains: M - ALPHA-AMANITIN protein, length: 8 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 102 203
95% 3 103 283
90% 3 103 297
70% 3 103 316
50% 3 104 342
40% 3 112 320
30% 3 112 330
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 101 207
95% 3 101 291
90% 3 101 306
70% 3 101 325
50% 3 102 352
40% 3 102 380
30% 3 102 386
Entity #4: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 108 186
95% 5 108 259
90% 5 108 272
70% 5 108 291
50% 5 109 310
40% 5 109 338
30% 5 109 349
Entity #5: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 105 194
95% 4 105 278
90% 4 105 290
70% 4 105 308
50% 4 107 320
40% 4 107 352
30% 4 107 357
Entity #6: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 107 187
95% 4 108 260
90% 4 108 273
70% 4 108 292
50% 4 108 321
40% 4 108 353
30% 4 110 347
Entity #7: Chains: I - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 102 205
95% 3 102 289
90% 3 102 304
70% 3 102 323
50% 3 103 348
40% 3 103 375
30% 3 103 380
Entity #8: Chains: J - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 107 188
95% 4 107 267
90% 4 107 279
70% 4 108 289
50% 4 116 276
40% 4 116 306
30% 4 116 321
Entity #9: Chains: K - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 103 201
95% 3 103 286
90% 3 103 301
70% 3 103 318
50% 3 103 354
40% 3 104 372
30% 3 104 377
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.