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An Information Portal to 107049 Biological Macromolecular Structures

Crystal structure of 10 subunit RNA polymerase II in complex with the inhibitor alpha-amanitin
Sequence Clustering and Redundancy Reduction Results
3CQZ
Sequence Clusters for the Sequence Entities in PDB 3CQZ
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 101 202
95% 3 101 285
90% 3 101 299
70% 3 101 315
50% 3 102 346
40% 3 102 369
30% 3 102 376
Entity #10: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 106 185
95% 4 106 261
90% 4 106 275
70% 4 106 292
50% 4 106 325
40% 4 106 349
30% 4 106 358
Entity #11: Chains: M - ALPHA-AMANITIN protein, length: 8 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 102 199
95% 3 103 274
90% 3 103 287
70% 3 103 306
50% 3 104 338
40% 3 112 313
30% 3 112 322
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 101 203
95% 3 101 287
90% 3 101 301
70% 3 101 317
50% 3 102 348
40% 3 102 372
30% 3 102 380
Entity #4: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 108 167
95% 5 108 240
90% 5 108 252
70% 5 108 274
50% 5 109 302
40% 5 109 325
30% 5 109 342
Entity #5: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 105 190
95% 4 105 269
90% 4 105 281
70% 4 105 297
50% 4 107 312
40% 4 107 339
30% 4 107 348
Entity #6: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 107 172
95% 4 108 241
90% 4 108 254
70% 4 108 275
50% 4 108 313
40% 4 108 340
30% 4 110 341
Entity #7: Chains: I - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 102 201
95% 3 102 284
90% 3 102 298
70% 3 102 314
50% 3 103 344
40% 3 103 367
30% 3 103 374
Entity #8: Chains: J - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 107 178
95% 4 107 253
90% 4 107 265
70% 4 108 270
50% 4 116 274
40% 4 116 302
30% 4 116 317
Entity #9: Chains: K - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 103 197
95% 3 103 278
90% 3 103 292
70% 3 103 309
50% 3 103 351
40% 3 104 364
30% 3 104 371
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.