Sequence Similarity Clusters for the Entities in PDB 3CQZ

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 113 206
95 % 3 113 291
90 % 3 113 305
70 % 3 113 329
50 % 3 123 328
40 % 3 123 355
30 % 3 123 363
Entity #10 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 120 183
95 % 4 120 253
90 % 4 120 261
70 % 4 120 298
50 % 4 120 327
40 % 4 120 353
30 % 4 120 360
Entity #11 | Chains: M
ALPHA-AMANITIN protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 114 204
95 % 3 115 286
90 % 3 115 298
70 % 3 115 322
50 % 3 125 323
40 % 3 133 309
30 % 3 136 313
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 110 209
95 % 3 110 301
90 % 3 110 316
70 % 3 110 337
50 % 3 111 364
40 % 3 111 397
30 % 3 111 398
Entity #4 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 125 171
95 % 5 125 236
90 % 5 125 246
70 % 5 125 277
50 % 5 126 309
40 % 5 135 303
30 % 5 135 321
Entity #5 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 119 188
95 % 4 119 254
90 % 4 119 262
70 % 4 119 299
50 % 4 130 295
40 % 4 130 318
30 % 4 130 332
Entity #6 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 124 175
95 % 4 125 237
90 % 4 125 247
70 % 4 125 279
50 % 4 125 317
40 % 4 125 338
30 % 4 136 316
Entity #7 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 114 205
95 % 3 114 290
90 % 3 114 304
70 % 3 114 328
50 % 3 115 351
40 % 3 115 384
30 % 3 118 378
Entity #8 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 124 176
95 % 4 124 242
90 % 4 124 251
70 % 4 134 256
50 % 4 142 252
40 % 4 142 273
30 % 4 142 290
Entity #9 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 115 203
95 % 3 115 289
90 % 3 115 302
70 % 3 115 326
50 % 3 115 357
40 % 3 116 380
30 % 3 116 383

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.