Sequence Similarity Clusters for the Entities in PDB 3CPL

Entity #1 | Chains: A,C
H-2 class I histocompatibility antigen, D-B alpha chain protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 66 207
95 % 37 68 259 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.2
PDBFlex
90 % 38 70 266
70 % 563 746 6
50 % 572 760 7
40 % 604 812 9
30 % 665 939 13
Entity #2 | Chains: B,D
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 114 189 81
95 % 139 234 62 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 139 234 66
70 % 691 953 4
50 % 703 975 3
40 % 703 975 6
30 % 703 975 9
Entity #3 | Chains: E,F
NP366 peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures