Sequence Similarity Clusters for the Entities in PDB 3CPL

Entity #1 | Chains: A,C
H-2 class I histocompatibility antigen, D-B alpha chain protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 64 198
95 % 37 68 256 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.2
PDBFlex
90 % 38 70 266
70 % 555 736 6
50 % 564 750 6
40 % 594 792 10
30 % 651 923 15
Entity #2 | Chains: B,D
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 90 136 98
95 % 139 234 63
90 % 139 234 66
70 % 680 940 4
50 % 692 962 3
40 % 692 962 7
30 % 692 962 12
Entity #3 | Chains: E,F
NP366 peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures