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Co-cystal of large Ribosomal Subunit mutant G2616A with CC-Puromycin
Sequence Clustering and Redundancy Reduction Results
3CD6
Sequence Clusters for the Sequence Entities in PDB 3CD6
Entity #1: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 47 567
95% 31 68 463
90% 31 68 486
70% 31 68 524
50% 31 118 244
40% 31 120 264
30% 31 120 283
Entity #10: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 74 289
95% 31 74 414
90% 31 74 438
70% 31 74 468
50% 31 74 516
40% 32 77 521
30% 32 78 519
Entity #11: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 44 657
95% 31 68 471
90% 31 68 493
70% 31 68 532
50% 31 120 239
40% 31 120 265
30% 35 333 48
Entity #12: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 74 288
95% 31 74 413
90% 31 74 437
70% 31 74 467
50% 31 74 515
40% 31 74 553
30% 34 325 52
Entity #13: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 23 1539
95% 29 47 822
90% 29 47 856
70% 31 68 525
50% 31 118 245
40% 31 118 271
30% 31 118 291
Entity #14: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 74 286
95% 31 74 411
90% 31 74 435
70% 31 74 465
50% 31 76 494
40% 31 76 532
30% 31 78 517
Entity #15: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 68 324
95% 31 68 473
90% 31 68 496
70% 31 68 535
50% 31 70 571
40% 31 70 604
30% 31 70 605
Entity #16: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 47 576
95% 31 68 469
90% 31 68 491
70% 31 68 530
50% 31 68 605
40% 31 70 601
30% 31 71 586
Entity #17: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 68 326
95% 31 68 475
90% 31 68 498
70% 31 68 537
50% 31 70 574
40% 31 70 608
30% 31 71 588
Entity #18: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 67 335
95% 31 68 467
90% 31 68 489
70% 31 68 528
50% 31 68 602
40% 31 68 635
30% 31 121 280
Entity #19: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 74 292
95% 31 74 416
90% 31 74 440
70% 31 74 470
50% 31 76 495
40% 31 78 511
30% 34 285 71
Entity #2: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 67 332
95% 31 74 406
90% 31 74 430
70% 31 74 461
50% 31 74 508
40% 31 124 256
30% 31 124 273
Entity #20: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 74 291
95% 31 74 415
90% 31 74 439
70% 31 74 469
50% 31 127 221
40% 31 127 249
30% 31 127 266
Entity #21: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 70 313
95% 30 70 451
90% 30 70 472
70% 30 70 508
50% 30 70 575
40% 30 70 609
30% 30 70 607
Entity #22: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 74 293
95% 31 74 417
90% 31 74 441
70% 31 74 471
50% 31 74 517
40% 31 74 556
30% 31 74 552
Entity #23: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 68 322
95% 31 68 468
90% 31 68 490
70% 31 68 529
50% 31 68 603
40% 31 70 600
30% 31 71 585
Entity #24: Chains: X - 50S ribosomal protein L31e protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 68 328
95% 31 68 477
90% 31 68 500
70% 31 68 539
50% 31 68 609
40% 31 68 640
30% 31 68 635
Entity #25: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 63 352
95% 30 63 520
90% 30 63 549
70% 30 63 595
50% 30 63 670
40% 30 63 697
30% 30 63 699
Entity #26: Chains: Z - 50S ribosomal protein L37Ae protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 17 2311
95% 8 17 2916
90% 8 17 2959
70% 8 17 2963
50% 8 17 2929
40% 8 17 2852
30% 8 17 2660
Entity #27: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 68 330
95% 31 68 479
90% 31 68 502
70% 31 68 541
50% 31 69 592
40% 31 69 626
30% 31 69 623
Entity #28: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 47 583
95% 31 68 480
90% 31 68 503
70% 31 68 542
50% 31 120 240
40% 31 120 267
30% 31 120 286
Entity #29: Chains: 3 - 50S ribosomal protein L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 68 327
95% 31 68 476
90% 31 68 499
70% 31 68 538
50% 31 68 608
40% 31 68 639
30% 31 119 288
Entity #3: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 23 1533
95% 31 74 409
90% 31 74 433
70% 31 74 464
50% 31 74 510
40% 31 76 530
30% 31 77 523
Entity #30: Chains: 0 - 23S RIBOSOMAL RNA rna, length: 2923 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #31: Chains: 9 - 5S RIBOSOMAL RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #32: Chains: 4 - RNA (5'-R(*CP*CP*(PPU))-3') rna, length: 3 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 74 287
95% 31 74 412
90% 31 74 436
70% 31 74 466
50% 31 74 513
40% 31 125 253
30% 31 125 270
Entity #5: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 68 321
95% 31 68 466
90% 31 68 488
70% 31 68 527
50% 31 68 601
40% 31 119 269
30% 35 328 51
Entity #6: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 47 578
95% 29 47 831
90% 31 68 495
70% 31 68 534
50% 45 95 309
40% 52 105 292
30% 52 107 309
Entity #7: Chains: G - 50S ribosomal protein L10E protein, length: 348 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 20 1792
95% 30 64 505
90% 30 64 531
70% 30 64 572
50% 30 64 651
40% 30 64 682
30% 30 65 675
Entity #8: Chains: H - 50S ribosomal protein L10e protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 47 571
95% 29 47 824
90% 29 47 858
70% 29 47 891
50% 31 74 514
40% 31 78 508
30% 31 78 518
Entity #9: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 42 693
95% 27 42 966
90% 27 42 985
70% 27 42 1015
50% 27 43 1032
40% 27 43 1058
30% 27 56 803
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.