Sequence Similarity Clusters for the Entities in PDB 3CD6

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 47 631
95 % 31 68 501
90 % 31 68 530
70 % 31 68 581
50 % 31 132 236
40 % 31 134 256
30 % 31 134 271
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 74 303
95 % 31 74 444
90 % 31 74 467
70 % 31 74 512
50 % 31 74 592
40 % 32 77 597
30 % 32 78 586
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 44 718
95 % 31 68 509
90 % 31 68 538
70 % 31 68 590
50 % 31 137 223
40 % 31 137 250
30 % 35 407 36
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 74 302
95 % 31 74 443
90 % 31 74 466
70 % 31 74 509
50 % 31 74 589
40 % 31 74 633
30 % 34 396 45
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 23 1658
95 % 29 47 905
90 % 29 47 937
70 % 31 68 582
50 % 31 132 237
40 % 31 132 263
30 % 31 132 278
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 74 300
95 % 31 74 440
90 % 31 74 464
70 % 31 74 506
50 % 31 76 565
40 % 31 76 609
30 % 31 78 582
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 68 347
95 % 31 68 511
90 % 31 68 541
70 % 31 68 593
50 % 31 70 648
40 % 31 70 688
30 % 31 70 690
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 47 640
95 % 31 68 507
90 % 31 68 536
70 % 31 68 588
50 % 31 68 684
40 % 31 70 685
30 % 31 71 671
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 68 348
95 % 31 68 512
90 % 31 68 542
70 % 31 68 594
50 % 31 70 649
40 % 31 70 690
30 % 31 71 674
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 67 357
95 % 31 68 505
90 % 31 68 534
70 % 31 68 586
50 % 31 68 681
40 % 31 68 714
30 % 31 136 267
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 74 308
95 % 31 74 448
90 % 31 74 471
70 % 31 74 517
50 % 31 76 569
40 % 31 78 585
30 % 34 342 53
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 67 355
95 % 31 74 432
90 % 31 74 457
70 % 31 74 502
50 % 31 74 580
40 % 31 141 244
30 % 31 141 257
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 74 305
95 % 31 74 446
90 % 31 74 469
70 % 31 74 514
50 % 31 141 219
40 % 31 141 248
30 % 31 141 260
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 70 332
95 % 30 70 487
90 % 30 70 514
70 % 30 70 563
50 % 30 70 651
40 % 30 70 691
30 % 30 70 691
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 74 309
95 % 31 74 449
90 % 31 74 472
70 % 31 74 518
50 % 31 74 596
40 % 31 74 640
30 % 31 74 637
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 68 345
95 % 31 68 506
90 % 31 68 535
70 % 31 68 587
50 % 31 68 682
40 % 31 70 684
30 % 31 71 670
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 68 350
95 % 31 68 514
90 % 31 68 544
70 % 31 68 596
50 % 31 68 688
40 % 31 68 718
30 % 31 68 719
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 63 379
95 % 30 63 561
90 % 30 63 592
70 % 30 63 641
50 % 30 63 738
40 % 30 63 763
30 % 30 63 766
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 17 2522
95 % 8 17 3193
90 % 8 17 3245
70 % 8 17 3228
50 % 8 17 3137
40 % 8 17 3051
30 % 8 17 2853
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 68 352
95 % 31 68 516
90 % 31 68 546
70 % 31 68 598
50 % 31 69 670
40 % 31 69 705
30 % 31 69 706
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 47 648
95 % 31 68 517
90 % 31 68 547
70 % 31 68 599
50 % 31 134 231
40 % 31 134 258
30 % 31 134 274
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 68 349
95 % 31 68 513
90 % 31 68 543
70 % 31 68 595
50 % 31 68 687
40 % 31 68 717
30 % 31 132 281
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 23 1654
95 % 31 74 436
90 % 31 74 461
70 % 31 74 505
50 % 31 74 583
40 % 31 76 607
30 % 31 77 593
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #32 | Chains: 4
RNA (5'-R(*CP*CP*(PPU))-3') rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 74 301
95 % 31 74 442
90 % 31 74 465
70 % 31 74 507
50 % 31 74 587
40 % 32 141 247
30 % 32 141 259
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 68 344
95 % 31 68 504
90 % 31 68 533
70 % 31 68 585
50 % 31 68 680
40 % 31 136 253
30 % 35 402 42
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 47 642
95 % 29 47 914
90 % 31 68 540
70 % 31 68 592
50 % 45 95 340
40 % 52 107 308
30 % 52 109 317
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 20 1940
95 % 30 64 546
90 % 30 64 577
70 % 30 64 625
50 % 30 64 723
40 % 30 64 751
30 % 30 65 748
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 47 636
95 % 29 47 909
90 % 29 47 942
70 % 29 47 985
50 % 31 74 588
40 % 31 79 571
30 % 31 79 574
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 42 760
95 % 27 42 1045
90 % 27 42 1063
70 % 27 42 1102
50 % 27 43 1122
40 % 27 43 1143
30 % 27 67 725

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.