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An Information Portal to 106082 Biological Macromolecular Structures

Co-cystal of large Ribosomal Subunit mutant G2616A with CC-Puromycin
Sequence Clustering and Redundancy Reduction Results
3CD6
Sequence Clusters for the Sequence Entities in PDB 3CD6
Entity #1: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 46 559
95% 30 67 475
90% 30 67 499
70% 30 67 537
50% 30 115 244
40% 30 117 267
30% 30 117 286
Entity #10: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 74 288
95% 31 74 409
90% 31 74 433
70% 31 74 463
50% 31 74 508
40% 32 77 511
30% 32 78 513
Entity #11: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 44 632
95% 31 68 463
90% 31 68 486
70% 31 68 522
50% 31 118 235
40% 31 118 264
30% 33 324 46
Entity #12: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 74 287
95% 31 74 408
90% 31 74 432
70% 31 74 462
50% 31 74 507
40% 31 74 544
30% 32 316 51
Entity #13: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 23 1499
95% 29 47 792
90% 29 47 825
70% 31 68 515
50% 31 116 241
40% 31 116 272
30% 31 116 293
Entity #14: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 74 285
95% 31 74 406
90% 31 74 430
70% 31 74 460
50% 31 76 486
40% 31 76 520
30% 31 78 511
Entity #15: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 68 321
95% 31 68 465
90% 31 68 489
70% 31 68 525
50% 31 70 549
40% 31 70 583
30% 31 70 582
Entity #16: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 47 544
95% 31 68 461
90% 31 68 484
70% 31 68 520
50% 31 68 584
40% 31 70 582
30% 31 71 563
Entity #17: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 68 324
95% 31 68 467
90% 31 68 491
70% 31 68 527
50% 31 70 552
40% 31 70 587
30% 31 71 565
Entity #18: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 67 333
95% 31 68 459
90% 31 68 482
70% 31 68 518
50% 31 68 581
40% 31 68 614
30% 31 119 280
Entity #19: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 74 291
95% 31 74 411
90% 31 74 435
70% 31 74 466
50% 31 76 488
40% 31 78 503
30% 32 278 69
Entity #2: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 67 330
95% 31 74 400
90% 31 74 424
70% 31 74 455
50% 31 74 501
40% 31 122 253
30% 31 122 272
Entity #20: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 74 290
95% 31 74 410
90% 31 74 434
70% 31 74 465
50% 31 125 220
40% 31 125 248
30% 31 125 264
Entity #21: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 70 309
95% 30 70 445
90% 30 70 465
70% 30 70 500
50% 30 70 553
40% 30 70 588
30% 30 70 584
Entity #22: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 74 292
95% 31 74 412
90% 31 74 436
70% 31 74 467
50% 31 74 510
40% 31 74 546
30% 31 74 542
Entity #23: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 68 319
95% 31 68 460
90% 31 68 483
70% 31 68 519
50% 31 68 582
40% 31 70 581
30% 31 71 562
Entity #24: Chains: X - 50S ribosomal protein L31e protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 68 326
95% 31 68 469
90% 31 68 493
70% 31 68 529
50% 31 68 589
40% 31 68 621
30% 31 68 614
Entity #25: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 63 350
95% 30 63 512
90% 30 63 538
70% 30 63 579
50% 30 63 655
40% 30 63 682
30% 30 63 681
Entity #26: Chains: Z - 50S ribosomal protein L37Ae protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 17 2257
95% 8 17 2848
90% 8 17 2891
70% 8 17 2893
50% 8 17 2872
40% 8 17 2804
30% 8 17 2607
Entity #27: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 68 328
95% 31 68 471
90% 31 68 495
70% 31 68 531
50% 31 69 568
40% 31 69 606
30% 31 69 601
Entity #28: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 47 554
95% 31 68 472
90% 31 68 496
70% 31 68 532
50% 31 118 236
40% 31 118 265
30% 31 118 285
Entity #29: Chains: 3 - 50S ribosomal protein L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 68 325
95% 31 68 468
90% 31 68 492
70% 31 68 528
50% 31 68 588
40% 31 68 620
30% 31 117 289
Entity #3: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 23 1492
95% 31 74 404
90% 31 74 428
70% 31 74 459
50% 31 74 504
40% 31 76 519
30% 31 77 516
Entity #30: Chains: 0 - 23S RIBOSOMAL RNA rna, length: 2923 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #31: Chains: 9 - 5S RIBOSOMAL RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #32: Chains: 4 - RNA (5'-R(*CP*CP*(PPU))-3') rna, length: 3 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 74 286
95% 31 74 407
90% 31 74 431
70% 31 74 461
50% 31 74 505
40% 31 122 256
30% 31 122 274
Entity #5: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 68 318
95% 31 68 458
90% 31 68 481
70% 31 68 517
50% 31 68 579
40% 31 117 269
30% 33 319 48
Entity #6: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 47 550
95% 29 47 800
90% 31 68 488
70% 31 68 524
50% 45 95 299
40% 52 105 287
30% 52 107 307
Entity #7: Chains: G - 50S ribosomal protein L10E protein, length: 348 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 20 1748
95% 30 64 498
90% 30 64 523
70% 30 64 563
50% 30 64 636
40% 30 64 667
30% 30 65 656
Entity #8: Chains: H - 50S ribosomal protein L10e protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 47 541
95% 29 47 794
90% 29 47 827
70% 29 47 865
50% 31 74 506
40% 31 78 500
30% 31 78 512
Entity #9: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 42 676
95% 27 42 941
90% 27 42 960
70% 27 42 995
50% 27 43 1014
40% 27 43 1041
30% 27 56 786
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.