Sequence Similarity Clusters for the Entities in PDB 3CD6

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 47 766
95 % 30 68 658
90 % 30 68 684
70 % 30 68 734
50 % 30 171 208
40 % 30 173 227
30 % 30 173 234
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 74 419
95 % 30 74 589
90 % 30 74 620
70 % 30 74 654
50 % 30 74 700
40 % 31 77 702
30 % 31 78 689
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 44 829
95 % 30 68 665
90 % 30 68 692
70 % 30 68 744
50 % 30 176 200
40 % 30 176 221
30 % 35 513 31
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 74 418
95 % 30 74 588
90 % 30 74 619
70 % 30 74 651
50 % 30 74 696
40 % 30 74 735
30 % 34 495 37
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 23 1962
95 % 28 47 1059
90 % 28 47 1076
70 % 30 68 736
50 % 30 172 209
40 % 30 172 233
30 % 30 172 238
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 74 416
95 % 30 74 586
90 % 30 74 617
70 % 30 74 648
50 % 30 76 666
40 % 30 76 709
30 % 30 79 678
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 68 475
95 % 30 68 666
90 % 30 68 694
70 % 30 68 746
50 % 30 70 763
40 % 30 70 799
30 % 30 70 788
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 47 771
95 % 30 68 664
90 % 30 68 690
70 % 30 68 742
50 % 30 68 793
40 % 30 72 764
30 % 30 72 755
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 68 476
95 % 30 68 668
90 % 30 68 696
70 % 30 68 749
50 % 30 70 765
40 % 30 70 801
30 % 30 71 772
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 67 489
95 % 30 68 662
90 % 30 68 688
70 % 30 68 739
50 % 30 68 790
40 % 30 68 825
30 % 30 175 232
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 74 423
95 % 30 74 592
90 % 30 74 623
70 % 30 74 657
50 % 30 76 670
40 % 30 78 692
30 % 34 402 60
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 67 487
95 % 30 74 577
90 % 30 74 609
70 % 30 74 643
50 % 30 74 689
40 % 30 180 215
30 % 30 180 224
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 74 422
95 % 30 74 591
90 % 30 74 622
70 % 30 74 656
50 % 30 180 199
40 % 30 180 217
30 % 30 180 226
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 70 454
95 % 29 70 638
90 % 29 70 663
70 % 29 70 717
50 % 29 70 766
40 % 29 70 804
30 % 29 70 792
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 74 424
95 % 30 74 593
90 % 30 74 624
70 % 30 74 658
50 % 30 74 701
40 % 30 74 738
30 % 30 74 730
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 68 473
95 % 30 68 663
90 % 30 68 689
70 % 30 68 740
50 % 30 68 791
40 % 30 70 796
30 % 30 71 769
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 68 478
95 % 30 68 670
90 % 30 68 698
70 % 30 68 751
50 % 30 68 796
40 % 30 68 829
30 % 30 68 814
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 63 546
95 % 29 63 757
90 % 29 63 785
70 % 29 63 833
50 % 29 63 871
40 % 29 63 899
30 % 29 63 885
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 17 2905
95 % 7 17 3641
90 % 7 17 3683
70 % 7 17 3629
50 % 7 17 3553
40 % 7 17 3431
30 % 7 17 3216
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 68 480
95 % 30 68 673
90 % 30 68 701
70 % 30 68 755
50 % 30 69 778
40 % 30 69 815
30 % 30 69 804
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 47 778
95 % 30 68 674
90 % 30 68 702
70 % 30 68 756
50 % 30 173 205
40 % 30 173 228
30 % 30 173 235
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 68 477
95 % 30 68 669
90 % 30 68 697
70 % 30 68 750
50 % 30 68 795
40 % 30 68 828
30 % 30 169 242
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 23 1952
95 % 30 74 582
90 % 30 74 615
70 % 30 74 646
50 % 30 74 691
40 % 30 76 707
30 % 31 78 686
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #32 | Chains: 4
RNA (5'-R(*CP*CP*(PPU))-3') rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 74 417
95 % 30 74 587
90 % 30 74 618
70 % 30 74 649
50 % 30 74 694
40 % 31 180 216
30 % 31 180 225
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 68 472
95 % 30 68 661
90 % 30 68 687
70 % 30 68 738
50 % 30 68 789
40 % 30 174 226
30 % 35 504 34
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 47 772
95 % 28 47 1063
90 % 30 68 693
70 % 30 68 745
50 % 44 105 322
40 % 51 122 280
30 % 51 124 282
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 20 2283
95 % 29 64 734
90 % 29 64 763
70 % 29 64 810
50 % 29 64 856
40 % 29 64 881
30 % 29 65 855
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 47 769
95 % 28 47 1061
90 % 28 47 1079
70 % 28 47 1118
50 % 30 74 695
40 % 30 79 679
30 % 30 79 680
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 42 881
95 % 26 42 1195
90 % 26 42 1222
70 % 26 42 1261
50 % 27 46 1139
40 % 27 46 1148
30 % 27 85 613

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.