Sequence Similarity Clusters for the Entities in PDB 3CD6

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 47 682
95 % 31 68 534
90 % 31 68 562
70 % 31 68 610
50 % 31 140 232
40 % 31 142 256
30 % 31 142 264
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 74 321
95 % 31 74 476
90 % 31 74 506
70 % 31 74 550
50 % 31 74 634
40 % 32 77 643
30 % 32 78 642
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 44 757
95 % 31 68 540
90 % 31 68 568
70 % 31 68 617
50 % 31 145 222
40 % 31 145 248
30 % 36 444 35
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 74 320
95 % 31 74 475
90 % 31 74 504
70 % 31 74 547
50 % 31 74 631
40 % 31 74 677
30 % 35 433 38
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 23 1777
95 % 29 47 965
90 % 29 47 988
70 % 31 68 611
50 % 31 140 233
40 % 31 140 260
30 % 31 140 272
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 74 318
95 % 31 74 473
90 % 31 74 502
70 % 31 74 544
50 % 31 76 610
40 % 31 76 653
30 % 31 78 639
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 68 364
95 % 31 68 541
90 % 31 68 570
70 % 31 68 619
50 % 31 70 681
40 % 31 70 726
30 % 31 70 732
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 47 688
95 % 31 68 539
90 % 31 68 567
70 % 31 68 616
50 % 31 68 707
40 % 31 70 723
30 % 31 71 713
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 68 366
95 % 31 68 543
90 % 31 68 573
70 % 31 68 622
50 % 31 70 683
40 % 31 70 728
30 % 31 71 716
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 67 374
95 % 31 68 537
90 % 31 68 565
70 % 31 68 614
50 % 31 68 705
40 % 31 68 745
30 % 31 144 259
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 74 326
95 % 31 74 480
90 % 31 74 510
70 % 31 74 554
50 % 31 76 613
40 % 31 78 631
30 % 35 371 55
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 67 372
95 % 31 74 466
90 % 31 74 496
70 % 31 74 540
50 % 31 74 624
40 % 31 149 237
30 % 31 149 248
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 74 324
95 % 31 74 478
90 % 31 74 508
70 % 31 74 552
50 % 31 149 219
40 % 31 149 242
30 % 31 149 253
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 70 348
95 % 30 70 518
90 % 30 70 545
70 % 30 70 592
50 % 30 70 684
40 % 30 70 729
30 % 30 70 733
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 74 327
95 % 31 74 481
90 % 31 74 511
70 % 31 74 555
50 % 31 74 637
40 % 31 74 682
30 % 31 74 682
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 68 362
95 % 31 68 538
90 % 31 68 566
70 % 31 68 615
50 % 31 68 706
40 % 31 70 721
30 % 31 71 712
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 68 368
95 % 31 68 545
90 % 31 68 575
70 % 31 68 624
50 % 31 68 710
40 % 31 68 749
30 % 31 68 754
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 63 416
95 % 30 63 616
90 % 30 63 648
70 % 30 63 685
50 % 30 63 764
40 % 30 63 798
30 % 30 63 799
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 17 2678
95 % 8 17 3357
90 % 8 17 3408
70 % 8 17 3379
50 % 8 17 3308
40 % 8 17 3196
30 % 8 17 2988
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 68 369
95 % 31 68 546
90 % 31 68 576
70 % 31 68 625
50 % 31 69 696
40 % 31 69 739
30 % 31 69 746
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 47 699
95 % 31 68 547
90 % 31 68 577
70 % 31 68 626
50 % 31 142 228
40 % 31 142 257
30 % 31 142 266
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 68 367
95 % 31 68 544
90 % 31 68 574
70 % 31 68 623
50 % 31 68 709
40 % 31 68 748
30 % 31 139 275
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 23 1771
95 % 31 74 469
90 % 31 74 499
70 % 31 74 543
50 % 31 74 627
40 % 31 76 652
30 % 31 77 647
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #32 | Chains: 4
RNA (5'-R(*CP*CP*(PPU))-3') rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 74 319
95 % 31 74 474
90 % 31 74 503
70 % 31 74 545
50 % 31 74 629
40 % 32 150 236
30 % 32 150 247
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 68 361
95 % 31 68 536
90 % 31 68 564
70 % 31 68 613
50 % 31 68 704
40 % 31 144 250
30 % 36 439 37
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 47 691
95 % 29 47 971
90 % 31 68 569
70 % 31 68 618
50 % 45 98 344
40 % 52 112 314
30 % 52 114 325
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 20 2084
95 % 30 64 592
90 % 30 64 623
70 % 30 64 667
50 % 30 64 750
40 % 30 64 784
30 % 30 65 779
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 47 685
95 % 29 47 969
90 % 29 47 993
70 % 29 47 1038
50 % 31 74 630
40 % 31 79 619
30 % 31 79 629
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 42 801
95 % 27 42 1114
90 % 27 42 1137
70 % 27 42 1178
50 % 28 45 1103
40 % 28 45 1123
30 % 28 69 729

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.