Sequence Similarity Clusters for the Entities in PDB 3CCV

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 47 670
95 % 32 68 520
90 % 32 68 548
70 % 32 68 601
50 % 32 136 235
40 % 32 138 259
30 % 32 138 271
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 74 312
95 % 32 74 462
90 % 32 74 490
70 % 32 74 535
50 % 32 74 624
40 % 33 77 623
30 % 33 78 617
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 44 741
95 % 32 68 526
90 % 32 68 554
70 % 32 68 608
50 % 32 141 223
40 % 32 141 254
30 % 36 424 36
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 74 311
95 % 32 74 461
90 % 32 74 488
70 % 32 74 533
50 % 32 74 621
40 % 32 74 664
30 % 35 413 43
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 23 1717
95 % 30 47 944
90 % 30 47 966
70 % 32 68 602
50 % 32 136 236
40 % 32 136 263
30 % 32 136 274
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 74 309
95 % 32 74 459
90 % 32 74 486
70 % 32 74 530
50 % 32 76 590
40 % 32 76 640
30 % 32 78 614
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 68 355
95 % 32 68 529
90 % 32 68 558
70 % 32 68 611
50 % 32 70 672
40 % 32 70 714
30 % 32 70 715
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 47 675
95 % 32 68 525
90 % 32 68 553
70 % 32 68 607
50 % 32 68 700
40 % 32 70 712
30 % 32 71 698
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 68 356
95 % 32 68 530
90 % 32 68 559
70 % 32 68 612
50 % 32 70 674
40 % 32 70 716
30 % 32 71 701
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 67 365
95 % 32 68 523
90 % 32 68 551
70 % 32 68 605
50 % 32 68 697
40 % 32 68 731
30 % 32 140 266
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 74 316
95 % 32 74 467
90 % 32 74 495
70 % 32 74 540
50 % 32 76 592
40 % 32 78 612
30 % 35 355 54
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 67 363
95 % 32 74 451
90 % 32 74 479
70 % 32 74 525
50 % 32 74 614
40 % 32 145 242
30 % 32 145 252
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 74 314
95 % 32 74 465
90 % 32 74 493
70 % 32 74 538
50 % 32 145 214
40 % 32 145 245
30 % 32 145 256
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 70 341
95 % 31 70 506
90 % 31 70 531
70 % 31 70 582
50 % 31 70 675
40 % 31 70 717
30 % 31 70 717
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 74 317
95 % 32 74 468
90 % 32 74 496
70 % 32 74 541
50 % 32 74 627
40 % 32 74 670
30 % 32 74 663
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 68 352
95 % 32 68 524
90 % 32 68 552
70 % 32 68 606
50 % 32 68 698
40 % 32 70 711
30 % 32 71 697
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 68 358
95 % 32 68 532
90 % 32 68 561
70 % 32 68 614
50 % 32 68 702
40 % 32 68 734
30 % 32 68 733
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 63 392
95 % 31 63 583
90 % 31 63 613
70 % 31 63 659
50 % 31 63 752
40 % 31 63 784
30 % 31 63 788
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 17 2593
95 % 9 17 3281
90 % 9 17 3333
70 % 9 17 3311
50 % 9 17 3225
40 % 9 17 3132
30 % 9 17 2933
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 68 360
95 % 32 68 534
90 % 32 68 563
70 % 32 68 616
50 % 32 69 688
40 % 32 69 727
30 % 32 69 729
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 47 686
95 % 32 68 536
90 % 32 68 564
70 % 32 68 617
50 % 32 138 228
40 % 32 138 261
30 % 32 138 272
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 68 357
95 % 32 68 531
90 % 32 68 560
70 % 32 68 613
50 % 32 68 701
40 % 32 68 733
30 % 32 136 275
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 23 1711
95 % 32 74 454
90 % 32 74 482
70 % 32 74 528
50 % 32 74 616
40 % 32 76 639
30 % 32 77 623
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 74 310
95 % 32 74 460
90 % 32 74 487
70 % 32 74 531
50 % 32 74 619
40 % 33 145 244
30 % 33 145 255
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 68 351
95 % 32 68 522
90 % 32 68 550
70 % 32 68 604
50 % 32 68 696
40 % 32 140 256
30 % 36 419 40
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 47 678
95 % 30 47 950
90 % 32 68 557
70 % 32 68 610
50 % 46 95 350
40 % 53 109 313
30 % 53 111 326
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 20 2011
95 % 31 64 566
90 % 31 64 597
70 % 31 64 643
50 % 31 64 737
40 % 31 64 768
30 % 31 65 763
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 47 673
95 % 30 47 948
90 % 30 47 971
70 % 30 47 1010
50 % 32 74 620
40 % 32 79 600
30 % 32 79 603
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 42 784
95 % 28 42 1079
90 % 28 42 1099
70 % 28 42 1138
50 % 28 43 1148
40 % 28 43 1174
30 % 28 67 740

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.