Sequence Similarity Clusters for the Entities in PDB 3CCV

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 29 47 801
95 % 31 68 692 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 31 68 721
70 % 31 68 772
50 % 31 175 204
40 % 31 177 225
30 % 31 177 236
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 74 448
95 % 31 74 621
90 % 31 74 649
70 % 31 74 694
50 % 31 74 747
40 % 32 77 746
30 % 32 78 732
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 44 868
95 % 31 68 699 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 31 68 729
70 % 31 68 783
50 % 31 180 201
40 % 36 543 20
30 % 36 543 33
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 74 446
95 % 31 74 620 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 31 74 648
70 % 31 74 691
50 % 31 74 743
40 % 31 74 779
30 % 35 523 37
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 23 2053
95 % 29 47 1099 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 29 47 1119
70 % 31 68 774
50 % 31 176 205
40 % 31 176 229
30 % 31 176 242
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 74 444
95 % 31 74 618 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 31 74 646
70 % 31 74 688
50 % 31 76 718
40 % 31 76 754
30 % 31 79 718
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 68 515
95 % 31 68 701 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 31 68 732
70 % 31 68 786
50 % 31 70 795
40 % 31 70 831
30 % 31 70 818
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 29 47 806
95 % 31 68 698 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 31 68 728
70 % 31 68 781
50 % 31 68 827
40 % 31 72 806
30 % 31 72 797
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 68 516
95 % 31 68 703 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 31 68 734
70 % 31 68 788
50 % 31 70 796
40 % 31 70 832
30 % 31 71 807
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 67 525
95 % 31 68 696 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 31 68 726
70 % 31 68 778
50 % 31 68 824
40 % 31 68 859
30 % 31 179 233
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 74 451
95 % 31 74 624 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 31 74 652
70 % 31 74 698
50 % 31 76 723
40 % 31 78 735
30 % 35 426 59
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 67 523
95 % 31 74 610 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.3
PDBFlex
90 % 31 74 640
70 % 31 74 684
50 % 31 74 736
40 % 31 184 216
30 % 31 184 226
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 74 450
95 % 31 74 623 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 31 74 651
70 % 31 74 696
50 % 31 183 199
40 % 31 184 218
30 % 31 184 228
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 70 483
95 % 30 70 670 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 30 70 696
70 % 30 70 749
50 % 30 70 797
40 % 30 70 833
30 % 30 70 820
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 74 452
95 % 31 74 625 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 31 74 653
70 % 31 74 699
50 % 31 74 748
40 % 35 387 52
30 % 35 413 64
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 68 512
95 % 31 68 697
90 % 31 68 727
70 % 31 68 779
50 % 31 68 825
40 % 31 70 829
30 % 31 71 805
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 68 518
95 % 31 68 705 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 31 68 736
70 % 31 68 790
50 % 31 68 832
40 % 31 68 863
30 % 31 68 848
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 63 562
95 % 30 63 779 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 30 63 807
70 % 30 63 851
50 % 30 63 904
40 % 30 63 928
30 % 30 63 908
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 17 3020
95 % 8 17 3760 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 8 17 3805
70 % 8 17 3761
50 % 8 17 3671
40 % 8 17 3535
30 % 8 17 3309
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 68 519
95 % 31 68 706 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 31 68 737
70 % 31 68 791
50 % 31 69 811
40 % 31 69 845
30 % 31 69 835
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 29 47 811
95 % 31 68 707 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 31 68 738
70 % 31 68 792
50 % 31 177 203
40 % 31 177 226
30 % 31 177 237
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 68 517
95 % 31 68 704 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 31 68 735
70 % 31 68 789
50 % 31 68 831
40 % 31 68 862
30 % 31 173 245
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 23 2045
95 % 31 74 614
90 % 31 74 644
70 % 31 74 686
50 % 31 74 738
40 % 31 76 752
30 % 32 78 728
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 74 445
95 % 31 74 619 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 31 74 647
70 % 31 74 689
50 % 31 74 741
40 % 32 184 217
30 % 32 184 227
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 68 511
95 % 31 68 695 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 31 68 724
70 % 31 68 776
50 % 31 68 823
40 % 31 178 222
30 % 36 534 36
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 29 47 807
95 % 29 47 1103 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 31 68 731
70 % 31 68 785
50 % 45 105 350
40 % 52 126 282
30 % 52 128 283
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 20 2382
95 % 30 64 754 Flexibility: No
Max RMSD: 3.2, Avg RMSD: 0.4
PDBFlex
90 % 30 64 786
70 % 30 64 828
50 % 30 64 883
40 % 30 64 904
30 % 30 65 880
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 29 47 804
95 % 29 47 1101 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 29 47 1122
70 % 29 47 1161
50 % 31 74 742
40 % 31 79 723
30 % 31 79 720
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 27 42 916
95 % 27 42 1239 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 27 42 1269
70 % 27 42 1300
50 % 28 46 1175
40 % 28 46 1188
30 % 28 85 631

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.