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Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation G2616A
Sequence Clustering and Redundancy Reduction Results
3CCV
Sequence Clusters for the Sequence Entities in PDB 3CCV
Entity #1: Chains: A - 50S ribosomal protein L2P protein, length: 240 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 46 508
95% 31 67 458
90% 31 67 481
70% 31 67 513
50% 31 102 330
40% 31 104 344
30% 31 104 355
Entity #10: Chains: J - 50S ribosomal protein L13P protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 74 275
95% 32 74 394
90% 32 74 418
70% 32 74 442
50% 32 74 491
40% 33 77 492
30% 33 78 498
Entity #11: Chains: K - 50S ribosomal protein L14P protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 44 545
95% 32 68 446
90% 32 68 468
70% 32 68 498
50% 32 105 318
40% 32 105 341
30% 33 402 54
Entity #12: Chains: L - 50S ribosomal protein L15P protein, length: 165 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 74 274
95% 32 74 393
90% 32 74 417
70% 32 74 441
50% 32 74 490
40% 32 74 521
30% 32 394 61
Entity #13: Chains: M - 50S ribosomal protein L15e protein, length: 196 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 23 1368
95% 30 47 726
90% 30 47 753
70% 32 68 491
50% 32 103 328
40% 32 103 350
30% 32 103 361
Entity #14: Chains: N - 50S ribosomal protein L18P protein, length: 187 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 74 272
95% 32 74 391
90% 32 74 415
70% 32 74 439
50% 32 76 472
40% 32 76 501
30% 32 78 495
Entity #15: Chains: O - 50S ribosomal protein L18e protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 68 310
95% 32 68 448
90% 32 68 471
70% 32 68 501
50% 32 70 526
40% 32 70 554
30% 32 70 559
Entity #16: Chains: P - 50S ribosomal protein L19e protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 47 497
95% 32 68 444
90% 32 68 466
70% 32 68 496
50% 32 68 551
40% 32 70 553
30% 32 71 545
Entity #17: Chains: Q - 50S ribosomal protein L21e protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 68 312
95% 32 68 449
90% 32 68 472
70% 32 68 502
50% 32 70 528
40% 32 70 557
30% 32 71 547
Entity #18: Chains: R - 50S ribosomal protein L22P protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 67 323
95% 32 68 442
90% 32 68 464
70% 32 68 494
50% 32 68 548
40% 32 68 580
30% 32 106 348
Entity #19: Chains: S - 50S ribosomal protein L23P protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 74 279
95% 32 74 396
90% 32 74 420
70% 32 74 444
50% 32 76 473
40% 32 78 483
30% 32 369 73
Entity #2: Chains: B - 50S ribosomal protein L3P protein, length: 338 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 67 320
95% 32 74 386
90% 32 74 411
70% 32 74 436
50% 32 74 485
40% 32 109 318
30% 32 109 332
Entity #20: Chains: T - 50S ribosomal protein L24P protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 74 278
95% 32 74 395
90% 32 74 419
70% 32 74 443
50% 32 112 286
40% 32 112 310
30% 32 112 326
Entity #21: Chains: U - 50S ribosomal protein L24e protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 70 299
95% 31 70 426
90% 31 70 446
70% 31 70 474
50% 31 70 529
40% 31 70 558
30% 31 70 560
Entity #22: Chains: V - 50S ribosomal protein L29P protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 74 280
95% 32 74 397
90% 32 74 421
70% 32 74 445
50% 32 74 492
40% 32 74 523
30% 32 74 525
Entity #23: Chains: W - 50S ribosomal protein L30P protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 68 308
95% 32 68 443
90% 32 68 465
70% 32 68 495
50% 32 68 549
40% 32 70 552
30% 32 71 544
Entity #24: Chains: X - 50S ribosomal protein L31e protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 68 314
95% 32 68 451
90% 32 68 474
70% 32 68 504
50% 32 68 554
40% 32 68 584
30% 32 68 581
Entity #25: Chains: Y - 50S ribosomal protein L32e protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 63 343
95% 31 63 492
90% 31 63 515
70% 31 63 550
50% 31 63 599
40% 31 63 626
30% 31 63 629
Entity #26: Chains: Z - 50S ribosomal protein L37Ae protein, length: 116 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 17 2101
95% 9 17 2665
90% 9 17 2715
70% 9 17 2730
50% 9 17 2748
40% 9 17 2695
30% 9 17 2505
Entity #27: Chains: 1 - 50S ribosomal protein L37e protein, length: 57 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 68 316
95% 32 68 453
90% 32 68 476
70% 32 68 506
50% 32 69 541
40% 32 69 572
30% 32 69 572
Entity #28: Chains: 2 - 50S ribosomal protein L39e protein, length: 50 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 47 501
95% 32 68 454
90% 32 68 477
70% 32 68 507
50% 32 105 321
40% 32 105 343
30% 32 105 354
Entity #29: Chains: 3 - 50S ribosomal protein L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 68 313
95% 32 68 450
90% 32 68 473
70% 32 68 503
50% 32 68 553
40% 32 68 583
30% 32 104 358
Entity #3: Chains: C - 50S ribosomal protein L4P protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 23 1364
95% 32 74 389
90% 32 74 413
70% 32 74 438
50% 32 74 487
40% 32 76 500
30% 32 77 502
Entity #30: Chains: 0 - 23S RIBOSOMAL RNA rna, length: 2923 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #31: Chains: 9 - 5S RIBOSOMAL RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: D - 50S ribosomal protein L5P protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 74 273
95% 32 74 392
90% 32 74 416
70% 32 74 440
50% 32 74 488
40% 32 109 320
30% 32 109 335
Entity #5: Chains: E - 50S ribosomal protein L6P protein, length: 178 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 68 307
95% 32 68 441
90% 32 68 463
70% 32 68 493
50% 32 68 547
40% 32 104 346
30% 33 397 60
Entity #6: Chains: F - 50S ribosomal protein L7Ae protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 47 499
95% 30 47 736
90% 32 68 470
70% 32 68 500
50% 46 97 279
40% 52 106 271
30% 52 108 290
Entity #7: Chains: G - 50S ribosomal protein L10E protein, length: 348 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 20 1603
95% 31 64 480
90% 31 64 503
70% 31 64 534
50% 31 64 585
40% 31 64 613
30% 31 65 607
Entity #8: Chains: H - 50S ribosomal protein L10e protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 47 494
95% 30 47 728
90% 30 47 755
70% 30 47 794
50% 32 74 489
40% 32 78 480
30% 32 78 497
Entity #9: Chains: I - 50S ribosomal protein L11P protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 42 577
95% 28 42 830
90% 28 42 855
70% 28 42 888
50% 28 43 920
40% 28 43 946
30% 28 55 727
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.