Sequence Similarity Clusters for the Entities in PDB 3CCV

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 47 762
95 % 32 68 647
90 % 32 68 675
70 % 32 68 718
50 % 32 170 205
40 % 32 172 227
30 % 32 172 232
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 74 417
95 % 32 74 578
90 % 32 74 609
70 % 32 74 642
50 % 32 74 692
40 % 33 77 693
30 % 33 78 685
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 44 827
95 % 32 68 653
90 % 32 68 682
70 % 32 68 727
50 % 32 175 201
40 % 32 175 222
30 % 37 509 31
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 74 416
95 % 32 74 577
90 % 32 74 608
70 % 32 74 639
50 % 32 74 688
40 % 32 74 727
30 % 36 491 37
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 23 1931
95 % 30 47 1051
90 % 30 47 1070
70 % 32 68 719
50 % 32 171 206
40 % 32 171 230
30 % 32 171 236
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 74 414
95 % 32 74 575
90 % 32 74 606
70 % 32 74 636
50 % 32 76 661
40 % 32 76 702
30 % 32 79 674
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 68 465
95 % 32 68 654
90 % 32 68 684
70 % 32 68 729
50 % 32 70 751
40 % 32 70 788
30 % 32 70 781
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 47 768
95 % 32 68 652
90 % 32 68 680
70 % 32 68 725
50 % 32 68 779
40 % 32 72 754
30 % 32 72 749
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 68 467
95 % 32 68 657
90 % 32 68 686
70 % 32 68 732
50 % 32 70 754
40 % 32 70 791
30 % 32 71 762
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 67 482
95 % 32 68 650
90 % 32 68 678
70 % 32 68 722
50 % 32 68 776
40 % 32 68 813
30 % 32 174 230
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 74 422
95 % 32 74 582
90 % 32 74 612
70 % 32 74 645
50 % 32 76 665
40 % 32 78 681
30 % 36 399 58
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 67 478
95 % 32 74 567
90 % 32 74 599
70 % 32 74 631
50 % 32 74 682
40 % 32 179 211
30 % 32 179 222
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 74 420
95 % 32 74 580
90 % 32 74 611
70 % 32 74 644
50 % 32 179 195
40 % 32 179 213
30 % 32 179 225
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 70 447
95 % 31 70 628
90 % 31 70 656
70 % 31 70 703
50 % 31 70 756
40 % 31 70 795
30 % 31 70 787
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 74 423
95 % 32 74 583
90 % 32 74 613
70 % 32 74 646
50 % 32 74 693
40 % 32 74 730
30 % 32 74 726
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 68 463
95 % 32 68 651
90 % 32 68 679
70 % 32 68 723
50 % 32 68 777
40 % 32 70 785
30 % 32 71 759
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 68 469
95 % 32 68 659
90 % 32 68 688
70 % 32 68 734
50 % 32 68 782
40 % 32 68 817
30 % 32 68 808
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 63 534
95 % 31 63 746
90 % 31 63 775
70 % 31 63 818
50 % 31 63 862
40 % 31 63 884
30 % 31 63 872
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 17 2865
95 % 9 17 3594
90 % 9 17 3634
70 % 9 17 3582
50 % 9 17 3502
40 % 9 17 3380
30 % 9 17 3175
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 68 470
95 % 32 68 660
90 % 32 68 689
70 % 32 68 736
50 % 32 69 766
40 % 32 69 807
30 % 32 69 800
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 47 774
95 % 32 68 661
90 % 32 68 690
70 % 32 68 737
50 % 32 172 203
40 % 32 172 228
30 % 32 172 234
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 68 468
95 % 32 68 658
90 % 32 68 687
70 % 32 68 733
50 % 32 68 781
40 % 32 68 816
30 % 32 168 242
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 23 1923
95 % 32 74 571
90 % 32 74 604
70 % 32 74 635
50 % 32 74 684
40 % 32 76 700
30 % 33 78 682
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 74 415
95 % 32 74 576
90 % 32 74 607
70 % 32 74 637
50 % 32 74 686
40 % 33 179 212
30 % 33 179 224
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 68 462
95 % 32 68 649
90 % 32 68 677
70 % 32 68 721
50 % 32 68 775
40 % 32 173 224
30 % 37 500 34
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 47 769
95 % 30 47 1055
90 % 32 68 683
70 % 32 68 728
50 % 46 105 319
40 % 53 122 276
30 % 53 124 277
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 20 2255
95 % 31 64 723
90 % 31 64 755
70 % 31 64 796
50 % 31 64 846
40 % 31 64 869
30 % 31 65 840
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 47 766
95 % 30 47 1053
90 % 30 47 1073
70 % 30 47 1110
50 % 32 74 687
40 % 32 79 670
30 % 32 79 676
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 42 875
95 % 28 42 1185
90 % 28 42 1210
70 % 28 42 1251
50 % 29 46 1128
40 % 29 46 1138
30 % 29 85 606

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.