Sequence Similarity Clusters for the Entities in PDB 3CCU

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 47 738
95 % 25 68 630
90 % 25 68 656
70 % 25 68 696
50 % 25 169 204
40 % 25 171 223
30 % 25 171 230
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 74 406
95 % 25 74 567
90 % 25 74 595
70 % 25 74 628
50 % 25 74 677
40 % 26 77 683
30 % 26 78 677
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 44 804
95 % 25 68 636
90 % 25 68 663
70 % 25 68 705
50 % 25 174 198
40 % 25 174 217
30 % 29 506 29
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 74 405
95 % 25 74 566
90 % 25 74 594
70 % 25 74 625
50 % 25 74 673
40 % 25 74 712
30 % 28 488 35
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 23 1902
95 % 24 47 1031
90 % 24 47 1049
70 % 25 68 697
50 % 25 170 205
40 % 25 170 227
30 % 25 170 233
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 74 403
95 % 25 74 564
90 % 25 74 592
70 % 25 74 622
50 % 25 76 651
40 % 25 76 693
30 % 25 79 665
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 68 452
95 % 25 68 637
90 % 25 68 665
70 % 25 68 707
50 % 25 70 729
40 % 25 70 766
30 % 25 70 766
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 47 744
95 % 25 68 635
90 % 25 68 661
70 % 25 68 703
50 % 25 68 755
40 % 25 72 738
30 % 25 72 737
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 68 454
95 % 25 68 640
90 % 25 68 667
70 % 25 68 711
50 % 25 70 730
40 % 25 70 767
30 % 25 71 750
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 67 463
95 % 25 68 633
90 % 25 68 659
70 % 25 68 700
50 % 25 68 752
40 % 25 68 787
30 % 25 173 226
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 74 411
95 % 25 74 571
90 % 25 74 598
70 % 25 74 631
50 % 25 76 654
40 % 25 78 670
30 % 28 397 57
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 67 460
95 % 25 74 555
90 % 25 74 585
70 % 25 74 617
50 % 25 74 667
40 % 25 178 205
30 % 25 178 218
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 74 409
95 % 25 74 569
90 % 25 74 597
70 % 25 74 630
50 % 25 178 192
40 % 25 178 208
30 % 25 178 221
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 70 434
95 % 24 70 615
90 % 24 70 641
70 % 24 70 681
50 % 24 70 731
40 % 24 70 769
30 % 24 70 768
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 74 413
95 % 25 74 572
90 % 25 74 599
70 % 25 74 632
50 % 25 74 678
40 % 25 74 715
30 % 25 74 716
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 68 450
95 % 25 68 634
90 % 25 68 660
70 % 25 68 701
50 % 25 68 753
40 % 25 70 763
30 % 25 71 747
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 68 456
95 % 25 68 642
90 % 25 68 669
70 % 25 68 713
50 % 25 68 760
40 % 25 68 792
30 % 25 68 789
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 63 498
95 % 24 63 708
90 % 24 63 740
70 % 24 63 786
50 % 24 63 834
40 % 24 63 854
30 % 24 63 848
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 17 2839
95 % 6 17 3559
90 % 6 17 3600
70 % 6 17 3548
50 % 6 17 3472
40 % 6 17 3354
30 % 6 17 3150
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 68 457
95 % 25 68 643
90 % 25 68 670
70 % 25 68 716
50 % 25 69 739
40 % 25 69 780
30 % 25 69 779
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 47 751
95 % 25 68 644
90 % 25 68 671
70 % 25 68 717
50 % 25 171 201
40 % 25 171 224
30 % 25 171 231
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 68 455
95 % 25 68 641
90 % 25 68 668
70 % 25 68 712
50 % 25 68 759
40 % 25 68 791
30 % 25 167 238
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 23 1894
95 % 25 74 559
90 % 25 74 589
70 % 25 74 621
50 % 25 74 669
40 % 25 76 691
30 % 26 78 674
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 74 404
95 % 25 74 565
90 % 25 74 593
70 % 25 74 623
50 % 25 74 671
40 % 26 178 207
30 % 26 178 220
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 68 449
95 % 25 68 632
90 % 25 68 658
70 % 25 68 699
50 % 25 68 751
40 % 25 172 221
30 % 29 497 32
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 47 745
95 % 24 47 1035
90 % 25 68 664
70 % 25 68 706
50 % 39 105 311
40 % 45 120 281
30 % 45 122 279
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 20 2227
95 % 24 64 683
90 % 24 64 715
70 % 24 64 758
50 % 24 64 814
40 % 24 64 836
30 % 24 65 822
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 47 742
95 % 24 47 1033
90 % 24 47 1052
70 % 24 47 1092
50 % 25 74 672
40 % 25 79 658
30 % 25 79 668
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 42 853
95 % 22 42 1162
90 % 22 42 1186
70 % 22 42 1229
50 % 23 46 1109
40 % 23 46 1124
30 % 23 85 596

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.