Sequence Similarity Clusters for the Entities in PDB 3CCS

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 43 1202
95 % 39 68 814 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 845
70 % 39 68 896
50 % 39 213 209
40 % 39 213 230
30 % 39 213 245
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 592
95 % 39 74 716 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 744
70 % 39 74 787
50 % 39 74 850
40 % 40 78 833
30 % 40 78 833
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 660
95 % 39 68 800 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 68 831
70 % 39 68 879
50 % 39 224 205
40 % 54 665 24
30 % 54 665 38
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 596
95 % 39 74 731 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 759
70 % 39 74 801
50 % 39 74 859
40 % 39 220 225
30 % 39 220 242
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 20 3148
95 % 36 47 1287 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 36 47 1312
70 % 39 68 880
50 % 39 222 206
40 % 39 222 224
30 % 39 222 240
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 587
95 % 39 74 718 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 39 74 746
70 % 39 74 789
50 % 39 76 820
40 % 39 76 852
30 % 39 79 820
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 671
95 % 39 68 815 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 846
70 % 39 68 898
50 % 39 70 901
40 % 39 70 929
30 % 39 70 917
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1071
95 % 39 68 819 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 850
70 % 39 68 901
50 % 39 68 946
40 % 39 72 903
30 % 39 72 904
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 665
95 % 39 68 806 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 837
70 % 39 68 888
50 % 39 70 911
40 % 39 70 943
30 % 39 71 911
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 682
95 % 39 68 804 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 835
70 % 39 68 886
50 % 39 68 935
40 % 39 68 963
30 % 39 220 241
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 599
95 % 39 74 732 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 39 74 762
70 % 39 74 807
50 % 39 77 810
40 % 53 505 38
30 % 53 505 60
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 684
95 % 39 74 728 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 39 74 756
70 % 39 74 798
50 % 39 74 858
40 % 39 229 212
30 % 39 229 231
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 593
95 % 39 74 724 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 752
70 % 39 74 795
50 % 39 229 203
40 % 39 230 211
30 % 39 230 230
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 70 630
95 % 37 70 773 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 37 70 803
70 % 37 70 847
50 % 37 70 902
40 % 37 70 930
30 % 37 70 918
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 594
95 % 39 74 725 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 753
70 % 39 74 796
50 % 39 74 853
40 % 53 459 59
30 % 53 485 72
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 664
95 % 39 68 805 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 836
70 % 39 68 887
50 % 39 68 936
40 % 39 70 934
30 % 39 71 910
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 661
95 % 39 68 816 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 847
70 % 39 68 899
50 % 39 68 944
40 % 39 68 970
30 % 39 70 926
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 63 735
95 % 36 63 904 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 63 933
70 % 36 63 974
50 % 36 63 1025
40 % 36 63 1042
30 % 36 63 1019
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 17 3974
95 % 11 17 4343 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 11 17 4376
70 % 11 17 4264
50 % 11 17 4098
40 % 11 17 3894
30 % 11 17 3552
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 672
95 % 39 68 801 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 832
70 % 39 68 881
50 % 39 69 912
40 % 39 69 945
30 % 39 69 931
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 683
95 % 39 68 808 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 839
70 % 39 68 891
50 % 39 215 208
40 % 39 215 229
30 % 39 215 244
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 658
95 % 39 68 798 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 829
70 % 39 68 877
50 % 39 68 928
40 % 39 210 234
30 % 39 210 249
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 23 2707
95 % 39 74 719 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 74 747
70 % 39 74 790
50 % 39 74 845
40 % 39 76 847
30 % 40 78 831
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 595
95 % 39 74 726 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 39 74 755
70 % 39 74 797
50 % 39 74 857
40 % 40 222 219
30 % 40 222 238
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 668
95 % 39 68 812 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 843
70 % 39 68 875
50 % 39 68 941
40 % 39 221 222
30 % 54 652 42
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1051
95 % 36 47 1272 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 39 68 828
70 % 39 68 876
50 % 56 108 418
40 % 63 133 348
30 % 77 300 160
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 64 712
95 % 37 64 867 Flexibility: No
Max RMSD: 3.2, Avg RMSD: 0.4
PDBFlex
90 % 37 64 899
70 % 37 64 944
50 % 37 64 1000
40 % 37 64 1018
30 % 37 64 1000
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1065
95 % 36 47 1279 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 47 1305
70 % 36 47 1333
50 % 39 74 851
40 % 39 79 812
30 % 39 79 821
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 42 1228
95 % 33 42 1461 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 33 42 1481
70 % 33 42 1496
50 % 34 46 1341
40 % 34 46 1331
30 % 34 99 638

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 11 I 50S ribosomal protein L11P 2238
2 1VQO 32 I 50S RIBOSOMAL PROTEIN L11P 2238
3 1VQ8 32 I 50S RIBOSOMAL PROTEIN L11P 2238
4 1S72 11 I 50S ribosomal protein L11P 2238
5 1YHQ 11 I 50S RIBOSOMAL PROTEIN L11P 2238
6 1VQP 32 I 50S RIBOSOMAL PROTEIN L11P 2238
7 1VQM 32 I 50S RIBOSOMAL PROTEIN L11P 2238
8 3CC2 9 I 50S ribosomal protein L11P 2238
9 1VQL 32 I 50S RIBOSOMAL PROTEIN L11P 2238
10 1VQK 32 I 50S RIBOSOMAL PROTEIN L11P 2238
11 1VQN 33 I 50S RIBOSOMAL PROTEIN L11P 2238
12 1YIJ 11 I 50S RIBOSOMAL PROTEIN L11P 2238
13 1YI2 11 I 50S RIBOSOMAL PROTEIN L11P 2238
14 1VQ9 32 I 50S RIBOSOMAL PROTEIN L11P 2238
15 1VQ7 32 I 50S RIBOSOMAL PROTEIN L11P 2238
16 3CCM 9 I 50S ribosomal protein L11P 2238
17 1VQ5 32 I 50S RIBOSOMAL PROTEIN L11P 2238
18 3CC7 9 I 50S ribosomal protein L11P 2238
19 1YIT 15 I 50S RIBOSOMAL PROTEIN L11P 2238
20 3CCE 9 I 50S ribosomal protein L11P 2238
21 3CCU 9 I 50S ribosomal protein L11P 2238
22 1VQ6 33 I 50S RIBOSOMAL PROTEIN L11P 2238
23 3CCL 9 I 50S ribosomal protein L11P 2238
24 1YJW 15 I 50S RIBOSOMAL PROTEIN L11P 2238
25 1YJ9 11 I 50S RIBOSOMAL PROTEIN L11P 2238
26 3CD6 9 I 50S ribosomal protein L11P 2238
27 3CCV 9 I 50S ribosomal protein L11P 2238
28 3CC4 9 I 50S ribosomal protein L11P 2238
29 2OTL 31 I 50S ribosomal protein L11P 2238
30 1VQ4 32 I 50S RIBOSOMAL PROTEIN L11P 2238
31 1YJN 11 I 50S RIBOSOMAL PROTEIN L11P 2238
32 3CMA 9 I 50S ribosomal protein L11P 2238
33 3CCS 9 I 50S ribosomal protein L11P 2238
34 3CCQ 9 I 50S ribosomal protein L11P 2238
35 3I56 9 I 50S ribosomal protein L11P 2238
36 3CCR 9 I 50S ribosomal protein L11P 2238
37 2OTJ 31 I 50S ribosomal protein L11P 2238
38 3CME 9 I 50S ribosomal protein L11P 2238
39 2QEX 31 I 50S ribosomal protein L11P 2238
40 3I55 10 I 50S ribosomal protein L11P 2238
41 3CCJ 9 I 50S ribosomal protein L11P 2238
42 2QA4 11 I 50S ribosomal protein L11P 2238