Sequence Similarity Clusters for the Entities in PDB 3CCS

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 43 1107
95 % 39 68 777 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 803
70 % 39 68 856
50 % 39 192 213
40 % 39 192 234
30 % 39 192 249
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 541
95 % 39 74 679 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 695
70 % 39 74 740
50 % 39 74 802
40 % 40 78 797
30 % 40 78 795
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 617
95 % 39 68 759 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 68 786
70 % 39 68 838
50 % 39 202 205
40 % 54 614 23
30 % 54 614 39
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 545
95 % 39 74 687 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 709
70 % 39 74 754
50 % 39 74 810
40 % 39 199 227
30 % 39 199 244
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 20 2976
95 % 36 47 1211 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 36 47 1232
70 % 39 68 839
50 % 39 201 207
40 % 39 201 224
30 % 39 201 241
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 538
95 % 39 74 675 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 39 74 699
70 % 39 74 745
50 % 39 76 783
40 % 39 76 816
30 % 39 79 780
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 632
95 % 39 68 778 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 805
70 % 39 68 858
50 % 39 70 862
40 % 39 70 892
30 % 39 70 880
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1006
95 % 39 68 780 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 807
70 % 39 68 859
50 % 39 68 907
40 % 39 72 858
30 % 39 72 863
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 618
95 % 39 68 760 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 787
70 % 39 68 840
50 % 39 70 871
40 % 39 70 901
30 % 39 71 874
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 644
95 % 39 68 769 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 796
70 % 39 68 848
50 % 39 68 896
40 % 39 68 920
30 % 39 199 245
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 549
95 % 39 74 688 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 39 74 712
70 % 39 74 759
50 % 39 77 769
40 % 53 475 45
30 % 53 475 64
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 647
95 % 39 74 686 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 39 74 708
70 % 39 74 753
50 % 39 74 809
40 % 39 207 217
30 % 39 207 235
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 542
95 % 39 74 681 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 703
70 % 39 74 749
50 % 39 208 198
40 % 39 209 216
30 % 39 209 234
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 70 590
95 % 37 70 732 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 37 70 760
70 % 37 70 805
50 % 37 70 863
40 % 37 70 886
30 % 37 70 882
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 543
95 % 39 74 682 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 704
70 % 39 74 750
50 % 39 74 805
40 % 53 435 52
30 % 53 461 67
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 626
95 % 39 68 770 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 797
70 % 39 68 849
50 % 39 68 897
40 % 39 70 891
30 % 39 71 873
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 625
95 % 39 68 767 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 794
70 % 39 68 846
50 % 39 68 893
40 % 39 68 918
30 % 39 70 884
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 63 699
95 % 36 63 861 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 63 892
70 % 36 63 927
50 % 36 63 973
40 % 36 63 996
30 % 36 63 982
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 17 3736
95 % 11 17 4098 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 11 17 4148
70 % 11 17 4070
50 % 11 17 3951
40 % 11 17 3757
30 % 11 17 3430
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 633
95 % 39 68 761 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 788
70 % 39 68 841
50 % 39 69 873
40 % 39 69 904
30 % 39 69 891
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 646
95 % 39 68 772 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 799
70 % 39 68 852
50 % 39 194 210
40 % 39 194 232
30 % 39 194 247
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 615
95 % 39 68 757 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 784
70 % 39 68 836
50 % 39 68 889
40 % 39 189 240
30 % 39 189 254
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 23 2562
95 % 39 74 674 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 74 698
70 % 39 74 744
50 % 39 74 800
40 % 39 76 815
30 % 40 78 793
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 544
95 % 39 74 684 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 39 74 707
70 % 39 74 752
50 % 39 74 808
40 % 40 201 223
30 % 40 201 240
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 630
95 % 39 68 776 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 802
70 % 39 68 834
50 % 39 68 902
40 % 39 199 228
30 % 54 603 40
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 991
95 % 36 47 1204 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 39 68 783
70 % 39 68 835
50 % 56 107 400
40 % 63 130 314
30 % 77 276 155
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 64 675
95 % 37 64 827 Flexibility: No
Max RMSD: 3.2, Avg RMSD: 0.4
PDBFlex
90 % 37 64 860
70 % 37 64 904
50 % 37 64 953
40 % 37 64 972
30 % 37 64 958
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1000
95 % 36 47 1207 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 47 1229
70 % 36 47 1256
50 % 39 74 803
40 % 39 79 774
30 % 39 79 786
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 42 1142
95 % 33 42 1359 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 33 42 1384
70 % 33 42 1408
50 % 34 46 1273
40 % 34 46 1265
30 % 34 89 666

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 11 I 50S ribosomal protein L11P 2238
2 1VQO 32 I 50S RIBOSOMAL PROTEIN L11P 2238
3 1VQ8 32 I 50S RIBOSOMAL PROTEIN L11P 2238
4 1S72 11 I 50S ribosomal protein L11P 2238
5 5COL 1 A, B 50S ribosomal protein L11 2190
6 1YHQ 11 I 50S RIBOSOMAL PROTEIN L11P 2238
7 1VQP 32 I 50S RIBOSOMAL PROTEIN L11P 2238
8 1VQM 32 I 50S RIBOSOMAL PROTEIN L11P 2238
9 3CC2 9 I 50S ribosomal protein L11P 2238
10 1VQL 32 I 50S RIBOSOMAL PROTEIN L11P 2238
11 1VQK 32 I 50S RIBOSOMAL PROTEIN L11P 2238
12 1VQN 33 I 50S RIBOSOMAL PROTEIN L11P 2238
13 1YIJ 11 I 50S RIBOSOMAL PROTEIN L11P 2238
14 1YI2 11 I 50S RIBOSOMAL PROTEIN L11P 2238
15 1VQ9 32 I 50S RIBOSOMAL PROTEIN L11P 2238
16 1VQ7 32 I 50S RIBOSOMAL PROTEIN L11P 2238
17 3CCM 9 I 50S ribosomal protein L11P 2238
18 1VQ5 32 I 50S RIBOSOMAL PROTEIN L11P 2238
19 3CC7 9 I 50S ribosomal protein L11P 2238
20 1YIT 15 I 50S RIBOSOMAL PROTEIN L11P 2238
21 3CCE 9 I 50S ribosomal protein L11P 2238
22 3CCU 9 I 50S ribosomal protein L11P 2238
23 1VQ6 33 I 50S RIBOSOMAL PROTEIN L11P 2238
24 3CCL 9 I 50S ribosomal protein L11P 2238
25 1YJW 15 I 50S RIBOSOMAL PROTEIN L11P 2238
26 1YJ9 11 I 50S RIBOSOMAL PROTEIN L11P 2238
27 3CD6 9 I 50S ribosomal protein L11P 2238
28 3CCV 9 I 50S ribosomal protein L11P 2238
29 3CC4 9 I 50S ribosomal protein L11P 2238
30 2OTL 31 I 50S ribosomal protein L11P 2238
31 1VQ4 32 I 50S RIBOSOMAL PROTEIN L11P 2238
32 1YJN 11 I 50S RIBOSOMAL PROTEIN L11P 2238
33 3CMA 9 I 50S ribosomal protein L11P 2238
34 3CCS 9 I 50S ribosomal protein L11P 2238
35 3CCQ 9 I 50S ribosomal protein L11P 2238
36 3I56 9 I 50S ribosomal protein L11P 2238
37 3CCR 9 I 50S ribosomal protein L11P 2238
38 2OTJ 31 I 50S ribosomal protein L11P 2238
39 5D8H 3 C 50S ribosomal protein L11 2190
40 3CME 9 I 50S ribosomal protein L11P 2238
41 2QEX 31 I 50S ribosomal protein L11P 2238
42 3I55 10 I 50S ribosomal protein L11P 2238
43 3CCJ 9 I 50S ribosomal protein L11P 2238
44 2QA4 11 I 50S ribosomal protein L11P 2238
45 5DGE 81 m2 60S ribosomal protein L12-A 4932
46 5DAR 3 C, F 50S ribosomal protein L11 2190
47 4V7R 72 DL 60S ribosomal protein L12 4932
48 6FTG 44 t Ribosomal protein L12 9986
49 6FTI 44 t Ribosomal protein L12 9986
50 6FTJ 44 t Ribosomal protein L12 9986
51 6FRK 4 4 Ribosomal protein L12 9986
52 5LZS 44 t Uncharacterized protein 9986
53 5LZT 44 t uL11 9986
54 5LZU 44 t uL11 9986
55 5LZV 44 t uL11 9986
56 5LZW 44 t uL11 9986
57 5LZX 44 t uL11 9986
58 5LZY 44 t uL11 9986
59 5LZZ 44 t uL11 9986
60 5JUO 16 P uL11 (yeast L12) 4932
61 5JUP 16 P uL11 (yeast L12) 4932
62 5JUS 16 P uL11 (yeast L12) 4932
63 5JUT 16 P uL11 (yeast L12) 4932
64 5JUU 16 P uL11 (yeast L12) 4932
65 5JCS 21 K 60S ribosomal protein L12-A 4932
66 5FL8 11 K 60S ribosomal protein L12-A 4932
67 5AN9 4 D 60S RIBOSOMAL PROTEIN L12 44689
68 5ANB 4 D 60S RIBOSOMAL PROTEIN L12 44689
69 5ANC 4 D 60S RIBOSOMAL PROTEIN L12 44689
70 5A8L 4 G 60S RIBOSOMAL PROTEIN L12 9606
71 3JAN 46 K Ribosomal protein uL11 SEE REMARK 999 9986
72 3JAJ 46 K Ribosomal protein uL11 SEE REMARK 999 9986
73 3JAG 44 t uL11 9986
74 3JAH 44 t uL11 9986
75 3JAI 44 t uL11 9986
76 5AJ0 45 Aq 60S ribosomal protein L12 9606
77 3J92 43 t uL11 9986
78 3J7P 14 K Ribosomal protein uL11 9823
79 3J77 12 62 60S ribosomal protein L12 4932
80 3J78 12 62 60S ribosomal protein L12 4932
81 4V7F 12 I 60S ribosomal protein L12 4932
82 4V7E 65 CK 60S ribosomal protein L11 4565
83 4V6W 40 CK 60S ribosomal protein L12 7227
84 4V6X 40 CK 60S ribosomal protein L12 9606
85 4V8M 46 BM 60S RIBOSOMAL PROTEIN L12, PUTATIVE 185431
86 4V6U 56 BH 50S ribosomal protein L11P 2261
87 3J16 10 H 60S ribosomal protein L11 4932
88 4V6I 39 BJ 60S ribosomal protein rpL12 (L11p) 4932
89 4V5Z 61 Bi 60S Ribosomal protein L12 9612