Sequence Similarity Clusters for the Entities in PDB 3CCS

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 43 1152
95 % 39 68 789 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 821
70 % 39 68 872
50 % 39 203 209
40 % 39 203 230
30 % 39 203 248
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 567
95 % 39 74 700 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 716
70 % 39 74 762
50 % 39 74 821
40 % 40 78 813
30 % 40 78 813
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 634
95 % 39 68 774 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 68 805
70 % 39 68 856
50 % 39 213 201
40 % 54 644 23
30 % 54 644 38
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 572
95 % 39 74 709 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 733
70 % 39 74 777
50 % 39 74 832
40 % 39 210 222
30 % 39 210 243
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 20 3059
95 % 36 47 1255 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 36 47 1280
70 % 39 68 857
50 % 39 212 202
40 % 39 212 221
30 % 39 212 241
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 563
95 % 39 74 695 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 39 74 720
70 % 39 74 766
50 % 39 76 796
40 % 39 76 826
30 % 39 79 800
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 648
95 % 39 68 790 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 822
70 % 39 68 874
50 % 39 70 880
40 % 39 70 904
30 % 39 70 896
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1039
95 % 39 68 795 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 827
70 % 39 68 877
50 % 39 68 928
40 % 39 72 877
30 % 39 72 881
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 635
95 % 39 68 775 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 806
70 % 39 68 858
50 % 39 70 891
40 % 39 70 920
30 % 39 71 891
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 662
95 % 39 68 780 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 812
70 % 39 68 863
50 % 39 68 918
40 % 39 68 943
30 % 39 210 242
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 575
95 % 39 74 710 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 39 74 736
70 % 39 74 783
50 % 39 77 785
40 % 53 495 39
30 % 53 495 58
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 665
95 % 39 74 707 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 39 74 731
70 % 39 74 775
50 % 39 74 831
40 % 39 218 216
30 % 39 218 237
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 568
95 % 39 74 702 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 726
70 % 39 74 771
50 % 39 219 200
40 % 39 220 214
30 % 39 220 236
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 70 607
95 % 37 70 745 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 37 70 777
70 % 37 70 820
50 % 37 70 881
40 % 37 70 905
30 % 37 70 898
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 569
95 % 39 74 703 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 727
70 % 39 74 772
50 % 39 74 824
40 % 53 450 50
30 % 53 476 63
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 640
95 % 39 68 781 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 813
70 % 39 68 864
50 % 39 68 919
40 % 39 70 910
30 % 39 71 890
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 636
95 % 39 68 791 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 823
70 % 39 68 875
50 % 39 68 926
40 % 39 68 950
30 % 39 70 906
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 63 717
95 % 36 63 877 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 63 906
70 % 36 63 947
50 % 36 63 995
40 % 36 63 1017
30 % 36 63 1002
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 17 3855
95 % 11 17 4213 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 11 17 4253
70 % 11 17 4161
50 % 11 17 4024
40 % 11 17 3819
30 % 11 17 3485
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 649
95 % 39 68 776 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 807
70 % 39 68 859
50 % 39 69 894
40 % 39 69 924
30 % 39 69 912
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 663
95 % 39 68 784 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 816
70 % 39 68 868
50 % 39 205 207
40 % 39 205 226
30 % 39 205 247
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 633
95 % 39 68 773 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 804
70 % 39 68 855
50 % 39 68 911
40 % 39 200 235
30 % 39 200 251
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 23 2627
95 % 39 74 694 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 74 719
70 % 39 74 765
50 % 39 74 816
40 % 39 76 825
30 % 40 78 810
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 571
95 % 39 74 705 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 39 74 730
70 % 39 74 774
50 % 39 74 830
40 % 40 212 220
30 % 40 212 239
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 645
95 % 39 68 788 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 820
70 % 39 68 852
50 % 39 68 924
40 % 39 210 225
30 % 54 633 39
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1020
95 % 36 47 1239 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 39 68 803
70 % 39 68 853
50 % 56 108 405
40 % 63 133 322
30 % 77 290 156
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 64 692
95 % 37 64 842 Flexibility: No
Max RMSD: 3.2, Avg RMSD: 0.4
PDBFlex
90 % 37 64 874
70 % 37 64 919
50 % 37 64 976
40 % 37 64 997
30 % 37 64 981
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1033
95 % 36 47 1247 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 47 1274
70 % 36 47 1303
50 % 39 74 817
40 % 39 79 792
30 % 39 79 799
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 42 1188
95 % 33 42 1419 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 33 42 1443
70 % 33 42 1459
50 % 34 46 1315
40 % 34 46 1305
30 % 34 98 611

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 11 I 50S ribosomal protein L11P 2238
2 1VQO 32 I 50S RIBOSOMAL PROTEIN L11P 2238
3 1VQ8 32 I 50S RIBOSOMAL PROTEIN L11P 2238
4 1S72 11 I 50S ribosomal protein L11P 2238
5 5COL 1 A, B 50S ribosomal protein L11 2190
6 1YHQ 11 I 50S RIBOSOMAL PROTEIN L11P 2238
7 1VQP 32 I 50S RIBOSOMAL PROTEIN L11P 2238
8 1VQM 32 I 50S RIBOSOMAL PROTEIN L11P 2238
9 3CC2 9 I 50S ribosomal protein L11P 2238
10 1VQL 32 I 50S RIBOSOMAL PROTEIN L11P 2238
11 1VQK 32 I 50S RIBOSOMAL PROTEIN L11P 2238
12 1VQN 33 I 50S RIBOSOMAL PROTEIN L11P 2238
13 1YIJ 11 I 50S RIBOSOMAL PROTEIN L11P 2238
14 1YI2 11 I 50S RIBOSOMAL PROTEIN L11P 2238
15 1VQ9 32 I 50S RIBOSOMAL PROTEIN L11P 2238
16 1VQ7 32 I 50S RIBOSOMAL PROTEIN L11P 2238
17 3CCM 9 I 50S ribosomal protein L11P 2238
18 1VQ5 32 I 50S RIBOSOMAL PROTEIN L11P 2238
19 3CC7 9 I 50S ribosomal protein L11P 2238
20 1YIT 15 I 50S RIBOSOMAL PROTEIN L11P 2238
21 3CCE 9 I 50S ribosomal protein L11P 2238
22 3CCU 9 I 50S ribosomal protein L11P 2238
23 1VQ6 33 I 50S RIBOSOMAL PROTEIN L11P 2238
24 3CCL 9 I 50S ribosomal protein L11P 2238
25 1YJW 15 I 50S RIBOSOMAL PROTEIN L11P 2238
26 1YJ9 11 I 50S RIBOSOMAL PROTEIN L11P 2238
27 3CD6 9 I 50S ribosomal protein L11P 2238
28 3CCV 9 I 50S ribosomal protein L11P 2238
29 3CC4 9 I 50S ribosomal protein L11P 2238
30 2OTL 31 I 50S ribosomal protein L11P 2238
31 1VQ4 32 I 50S RIBOSOMAL PROTEIN L11P 2238
32 1YJN 11 I 50S RIBOSOMAL PROTEIN L11P 2238
33 3CMA 9 I 50S ribosomal protein L11P 2238
34 3CCS 9 I 50S ribosomal protein L11P 2238
35 3CCQ 9 I 50S ribosomal protein L11P 2238
36 3I56 9 I 50S ribosomal protein L11P 2238
37 3CCR 9 I 50S ribosomal protein L11P 2238
38 2OTJ 31 I 50S ribosomal protein L11P 2238
39 5D8H 3 C 50S ribosomal protein L11 2190
40 3CME 9 I 50S ribosomal protein L11P 2238
41 2QEX 31 I 50S ribosomal protein L11P 2238
42 3I55 10 I 50S ribosomal protein L11P 2238
43 3CCJ 9 I 50S ribosomal protein L11P 2238
44 2QA4 11 I 50S ribosomal protein L11P 2238
45 5DGE 81 m2 60S ribosomal protein L12-A 4932
46 5DAR 3 C, F 50S ribosomal protein L11 2190
47 4V7R 72 DL 60S ribosomal protein L12 4932
48 6MTD 47 t eL11 9986
49 6MTE 47 t uL11 9986
50 6HCQ 81 u3 Ribosomal protein L12 9986
51 6HCJ 81 u3 Ribosomal protein L12 9986
52 6HCM 79 t3 Ribosomal protein L12 9986
53 6HCF 79 t3 Ribosomal protein L12 9986
54 6GZ3 84 Aq Ribosomal protein L12 9986
55 6GZ4 84 Aq ribosomal protein uL11 9986
56 6GZ5 84 Aq ribosomal protein uL11 9986
57 6FTG 44 t Ribosomal protein L12 9986
58 6FTI 44 t Ribosomal protein L12 9986
59 6FTJ 44 t Ribosomal protein L12 9986
60 6FRK 4 4 Ribosomal protein L12 9986
61 5LZS 44 t uL11 9986
62 5LZT 44 t uL11 9986
63 5LZU 44 t uL11 9986
64 5LZV 44 t uL11 9986
65 5LZW 44 t uL11 9986
66 5LZX 44 t uL11 9986
67 5LZY 44 t uL11 9986
68 5LZZ 44 t uL11 9986
69 5JUO 16 P uL11 (yeast L12) 4932
70 5JUP 16 P uL11 (yeast L12) 4932
71 5JUS 16 P uL11 (yeast L12) 4932
72 5JUT 16 P uL11 (yeast L12) 4932
73 5JUU 16 P uL11 (yeast L12) 4932
74 5JCS 21 K 60S ribosomal protein L12-A 4932
75 5FL8 11 K 60S ribosomal protein L12-A 4932
76 5AN9 4 D 60S RIBOSOMAL PROTEIN L12 44689
77 5ANB 4 D 60S RIBOSOMAL PROTEIN L12 44689
78 5ANC 4 D 60S RIBOSOMAL PROTEIN L12 44689
79 5A8L 4 G 60S RIBOSOMAL PROTEIN L12 9606
80 3JAN 46 K Ribosomal protein uL11 SEE REMARK 999 9986
81 3JAJ 46 K Ribosomal protein uL11 SEE REMARK 999 9986
82 3JAG 44 t uL11 9986
83 3JAH 44 t uL11 9986
84 3JAI 44 t uL11 9986
85 5AJ0 45 Aq 60S ribosomal protein L12 9606
86 3J92 43 t uL11 9986
87 3J7P 14 K Ribosomal protein uL11 9823
88 3J77 12 62 60S ribosomal protein L12 4932
89 3J78 12 62 60S ribosomal protein L12 4932
90 4V7F 12 I 60S ribosomal protein L12 4932
91 4V7E 65 CK 60S ribosomal protein L11 4565
92 4V6W 40 CK 60S ribosomal protein L12 7227
93 4V6X 40 CK 60S ribosomal protein L12 9606
94 4V8M 46 BM 60S RIBOSOMAL PROTEIN L12, PUTATIVE 185431
95 4V6U 56 BH 50S ribosomal protein L11P 2261
96 3J16 10 H 60S ribosomal protein L11 4932
97 4V6I 39 BJ 60S ribosomal protein rpL12 (L11p) 4932
98 4V5Z 61 Bi 60S Ribosomal protein L12 9612