Sequence Similarity Clusters for the Entities in PDB 3CCS

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 43 1188
95 % 39 68 803 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 834
70 % 39 68 883
50 % 39 205 210
40 % 39 205 231
30 % 39 205 249
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 581
95 % 39 74 712 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 729
70 % 39 74 775
50 % 39 74 837
40 % 40 78 827
30 % 40 78 824
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 646
95 % 39 68 789 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 68 820
70 % 39 68 868
50 % 39 215 204
40 % 54 647 25
30 % 54 647 39
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 586
95 % 39 74 721 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 746
70 % 39 74 790
50 % 39 74 846
40 % 39 212 225
30 % 39 212 244
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 20 3101
95 % 36 47 1275 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 36 47 1300
70 % 39 68 869
50 % 39 214 205
40 % 39 214 224
30 % 39 214 242
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 577
95 % 39 74 707 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 39 74 733
70 % 39 74 779
50 % 39 76 811
40 % 39 76 842
30 % 39 79 810
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 657
95 % 39 68 804 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 835
70 % 39 68 885
50 % 39 70 890
40 % 39 70 920
30 % 39 70 912
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1061
95 % 39 68 810 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 841
70 % 39 68 890
50 % 39 68 937
40 % 39 72 891
30 % 39 72 896
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 647
95 % 39 68 790 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 821
70 % 39 68 870
50 % 39 70 901
40 % 39 70 935
30 % 39 71 907
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 673
95 % 39 68 795 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 826
70 % 39 68 875
50 % 39 68 927
40 % 39 68 957
30 % 39 212 243
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 589
95 % 39 74 722 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 39 74 749
70 % 39 74 795
50 % 39 77 802
40 % 53 496 40
30 % 53 496 58
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 676
95 % 39 74 718 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 39 74 743
70 % 39 74 787
50 % 39 74 845
40 % 39 220 219
30 % 39 220 239
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 582
95 % 39 74 714 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 739
70 % 39 74 784
50 % 39 221 203
40 % 39 222 218
30 % 39 222 237
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 70 620
95 % 37 70 762 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 37 70 794
70 % 37 70 836
50 % 37 70 891
40 % 37 70 921
30 % 37 70 913
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 583
95 % 39 74 715 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 740
70 % 39 74 785
50 % 39 74 840
40 % 53 451 60
30 % 53 477 68
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 651
95 % 39 68 796 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 827
70 % 39 68 876
50 % 39 68 928
40 % 39 70 925
30 % 39 71 906
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 648
95 % 39 68 805 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 836
70 % 39 68 886
50 % 39 68 934
40 % 39 68 963
30 % 39 70 922
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 63 730
95 % 36 63 897 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 63 925
70 % 36 63 965
50 % 36 63 1011
40 % 36 63 1031
30 % 36 63 1014
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 17 3897
95 % 11 17 4265 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 11 17 4302
70 % 11 17 4209
50 % 11 17 4059
40 % 11 17 3861
30 % 11 17 3522
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 658
95 % 39 68 791 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 822
70 % 39 68 871
50 % 39 69 904
40 % 39 69 939
30 % 39 69 927
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 675
95 % 39 68 798 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 829
70 % 39 68 879
50 % 39 207 209
40 % 39 207 229
30 % 39 207 247
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 645
95 % 39 68 788 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 819
70 % 39 68 867
50 % 39 68 921
40 % 39 202 235
30 % 39 202 252
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 23 2664
95 % 39 74 706 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 74 732
70 % 39 74 778
50 % 39 74 834
40 % 39 76 841
30 % 40 78 822
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 585
95 % 39 74 716 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 39 74 742
70 % 39 74 786
50 % 39 74 844
40 % 40 214 221
30 % 40 214 240
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 655
95 % 39 68 802 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 833
70 % 39 68 865
50 % 39 68 932
40 % 39 212 226
30 % 54 636 40
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1042
95 % 36 47 1259 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 39 68 818
70 % 39 68 866
50 % 56 108 415
40 % 63 133 334
30 % 77 292 159
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 64 706
95 % 37 64 860 Flexibility: No
Max RMSD: 3.2, Avg RMSD: 0.4
PDBFlex
90 % 37 64 892
70 % 37 64 937
50 % 37 64 987
40 % 37 64 1008
30 % 37 64 992
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1055
95 % 36 47 1266 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 47 1293
70 % 36 47 1321
50 % 39 74 838
40 % 39 79 806
30 % 39 79 814
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 42 1212
95 % 33 42 1444 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 33 42 1467
70 % 33 42 1482
50 % 34 46 1333
40 % 34 46 1322
30 % 34 98 628

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 11 I 50S ribosomal protein L11P 2238
2 1VQO 32 I 50S RIBOSOMAL PROTEIN L11P 2238
3 1VQ8 32 I 50S RIBOSOMAL PROTEIN L11P 2238
4 1S72 11 I 50S ribosomal protein L11P 2238
5 5COL 1 A, B 50S ribosomal protein L11 2190
6 1YHQ 11 I 50S RIBOSOMAL PROTEIN L11P 2238
7 1VQP 32 I 50S RIBOSOMAL PROTEIN L11P 2238
8 1VQM 32 I 50S RIBOSOMAL PROTEIN L11P 2238
9 3CC2 9 I 50S ribosomal protein L11P 2238
10 1VQL 32 I 50S RIBOSOMAL PROTEIN L11P 2238
11 1VQK 32 I 50S RIBOSOMAL PROTEIN L11P 2238
12 1VQN 33 I 50S RIBOSOMAL PROTEIN L11P 2238
13 1YIJ 11 I 50S RIBOSOMAL PROTEIN L11P 2238
14 1YI2 11 I 50S RIBOSOMAL PROTEIN L11P 2238
15 1VQ9 32 I 50S RIBOSOMAL PROTEIN L11P 2238
16 1VQ7 32 I 50S RIBOSOMAL PROTEIN L11P 2238
17 3CCM 9 I 50S ribosomal protein L11P 2238
18 1VQ5 32 I 50S RIBOSOMAL PROTEIN L11P 2238
19 3CC7 9 I 50S ribosomal protein L11P 2238
20 1YIT 15 I 50S RIBOSOMAL PROTEIN L11P 2238
21 3CCE 9 I 50S ribosomal protein L11P 2238
22 3CCU 9 I 50S ribosomal protein L11P 2238
23 1VQ6 33 I 50S RIBOSOMAL PROTEIN L11P 2238
24 3CCL 9 I 50S ribosomal protein L11P 2238
25 1YJW 15 I 50S RIBOSOMAL PROTEIN L11P 2238
26 1YJ9 11 I 50S RIBOSOMAL PROTEIN L11P 2238
27 3CD6 9 I 50S ribosomal protein L11P 2238
28 3CCV 9 I 50S ribosomal protein L11P 2238
29 3CC4 9 I 50S ribosomal protein L11P 2238
30 2OTL 31 I 50S ribosomal protein L11P 2238
31 1VQ4 32 I 50S RIBOSOMAL PROTEIN L11P 2238
32 1YJN 11 I 50S RIBOSOMAL PROTEIN L11P 2238
33 3CMA 9 I 50S ribosomal protein L11P 2238
34 3CCS 9 I 50S ribosomal protein L11P 2238
35 3CCQ 9 I 50S ribosomal protein L11P 2238
36 3I56 9 I 50S ribosomal protein L11P 2238
37 3CCR 9 I 50S ribosomal protein L11P 2238
38 2OTJ 31 I 50S ribosomal protein L11P 2238
39 5D8H 3 C 50S ribosomal protein L11 2190
40 3CME 9 I 50S ribosomal protein L11P 2238
41 2QEX 31 I 50S ribosomal protein L11P 2238
42 3I55 10 I 50S ribosomal protein L11P 2238
43 3CCJ 9 I 50S ribosomal protein L11P 2238
44 2QA4 11 I 50S ribosomal protein L11P 2238
45 5DGE 81 m2 60S ribosomal protein L12-A 4932
46 5DAR 3 C, F 50S ribosomal protein L11 2190
47 4V7R 72 DL 60S ribosomal protein L12 4932
48 6MTD 47 t eL11 9986
49 6MTE 47 t uL11 9986
50 6HCQ 81 u3 Ribosomal protein L12 9986
51 6HCJ 81 u3 Ribosomal protein L12 9986
52 6HCM 79 t3 Ribosomal protein L12 9986
53 6HCF 79 t3 Ribosomal protein L12 9986
54 6GZ3 84 Aq Ribosomal protein L12 9986
55 6GZ4 84 Aq ribosomal protein uL11 9986
56 6GZ5 84 Aq ribosomal protein uL11 9986
57 6FTG 44 t Ribosomal protein L12 9986
58 6FTI 44 t Ribosomal protein L12 9986
59 6FTJ 44 t Ribosomal protein L12 9986
60 6FRK 4 4 Ribosomal protein L12 9986
61 5LZS 44 t uL11 9986
62 5LZT 44 t uL11 9986
63 5LZU 44 t uL11 9986
64 5LZV 44 t uL11 9986
65 5LZW 44 t uL11 9986
66 5LZX 44 t uL11 9986
67 5LZY 44 t uL11 9986
68 5LZZ 44 t uL11 9986
69 5JUO 16 P uL11 (yeast L12) 4932
70 5JUP 16 P uL11 (yeast L12) 4932
71 5JUS 16 P uL11 (yeast L12) 4932
72 5JUT 16 P uL11 (yeast L12) 4932
73 5JUU 16 P uL11 (yeast L12) 4932
74 5JCS 21 K 60S ribosomal protein L12-A 4932
75 5FL8 11 K 60S ribosomal protein L12-A 4932
76 5AN9 4 D 60S RIBOSOMAL PROTEIN L12 44689
77 5ANB 4 D 60S RIBOSOMAL PROTEIN L12 44689
78 5ANC 4 D 60S RIBOSOMAL PROTEIN L12 44689
79 5A8L 4 G 60S RIBOSOMAL PROTEIN L12 9606
80 3JAN 46 K Ribosomal protein uL11 SEE REMARK 999 9986
81 3JAJ 46 K Ribosomal protein uL11 SEE REMARK 999 9986
82 3JAG 44 t uL11 9986
83 3JAH 44 t uL11 9986
84 3JAI 44 t uL11 9986
85 5AJ0 45 Aq 60S ribosomal protein L12 9606
86 3J92 43 t uL11 9986
87 3J7P 14 K Ribosomal protein uL11 9823
88 3J77 12 62 60S ribosomal protein L12 4932
89 3J78 12 62 60S ribosomal protein L12 4932
90 4V7F 12 I 60S ribosomal protein L12 4932
91 4V7E 65 CK 60S ribosomal protein L11 4565
92 4V6W 40 CK 60S ribosomal protein L12 7227
93 4V6X 40 CK 60S ribosomal protein L12 9606
94 4V8M 46 BM 60S RIBOSOMAL PROTEIN L12, PUTATIVE 185431
95 4V6U 56 BH 50S ribosomal protein L11P 2261
96 3J16 10 H 60S ribosomal protein L11 4932
97 4V6I 39 BJ 60S ribosomal protein rpL12 (L11p) 4932
98 4V5Z 61 Bi 60S Ribosomal protein L12 9612