Sequence Similarity Clusters for the Entities in PDB 3CCS

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 43 1188
95 % 39 68 803 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 834
70 % 39 68 883
50 % 39 205 210
40 % 39 205 231
30 % 39 205 249
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 581
95 % 39 74 712 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 729
70 % 39 74 775
50 % 39 74 837
40 % 40 78 827
30 % 40 78 824
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 646
95 % 39 68 789 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 68 820
70 % 39 68 868
50 % 39 215 204
40 % 54 647 25
30 % 54 647 39
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 586
95 % 39 74 721 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 746
70 % 39 74 790
50 % 39 74 846
40 % 39 212 225
30 % 39 212 244
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 20 3101
95 % 36 47 1275 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 36 47 1300
70 % 39 68 869
50 % 39 214 205
40 % 39 214 224
30 % 39 214 242
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 577
95 % 39 74 707 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 39 74 733
70 % 39 74 779
50 % 39 76 811
40 % 39 76 842
30 % 39 79 810
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 657
95 % 39 68 804 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 835
70 % 39 68 885
50 % 39 70 890
40 % 39 70 920
30 % 39 70 912
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1061
95 % 39 68 810 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 841
70 % 39 68 890
50 % 39 68 937
40 % 39 72 891
30 % 39 72 896
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 647
95 % 39 68 790 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 821
70 % 39 68 870
50 % 39 70 901
40 % 39 70 935
30 % 39 71 907
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 673
95 % 39 68 795 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 826
70 % 39 68 875
50 % 39 68 927
40 % 39 68 957
30 % 39 212 243
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 589
95 % 39 74 722 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 39 74 749
70 % 39 74 795
50 % 39 77 802
40 % 53 496 40
30 % 53 496 58
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 676
95 % 39 74 718 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 39 74 743
70 % 39 74 787
50 % 39 74 845
40 % 39 220 219
30 % 39 220 239
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 582
95 % 39 74 714 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 739
70 % 39 74 784
50 % 39 221 203
40 % 39 222 218
30 % 39 222 237
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 70 620
95 % 37 70 762 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 37 70 794
70 % 37 70 836
50 % 37 70 891
40 % 37 70 921
30 % 37 70 913
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 583
95 % 39 74 715 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 740
70 % 39 74 785
50 % 39 74 840
40 % 53 451 60
30 % 53 477 68
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 651
95 % 39 68 796 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 827
70 % 39 68 876
50 % 39 68 928
40 % 39 70 925
30 % 39 71 906
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 648
95 % 39 68 805 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 836
70 % 39 68 886
50 % 39 68 934
40 % 39 68 963
30 % 39 70 922
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 63 730
95 % 36 63 897 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 63 925
70 % 36 63 965
50 % 36 63 1011
40 % 36 63 1031
30 % 36 63 1014
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 17 3897
95 % 11 17 4265 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 11 17 4302
70 % 11 17 4209
50 % 11 17 4059
40 % 11 17 3861
30 % 11 17 3522
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 658
95 % 39 68 791 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 822
70 % 39 68 871
50 % 39 69 904
40 % 39 69 939
30 % 39 69 927
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 675
95 % 39 68 798 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 829
70 % 39 68 879
50 % 39 207 209
40 % 39 207 229
30 % 39 207 247
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 645
95 % 39 68 788 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 819
70 % 39 68 867
50 % 39 68 921
40 % 39 202 235
30 % 39 202 252
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 23 2664
95 % 39 74 706 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 74 732
70 % 39 74 778
50 % 39 74 834
40 % 39 76 841
30 % 40 78 822
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 585
95 % 39 74 716 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 39 74 742
70 % 39 74 786
50 % 39 74 844
40 % 40 214 221
30 % 40 214 240
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 655
95 % 39 68 802 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 833
70 % 39 68 865
50 % 39 68 932
40 % 39 212 226
30 % 54 636 40
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1042
95 % 36 47 1259 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 39 68 818
70 % 39 68 866
50 % 56 108 415
40 % 63 133 334
30 % 77 292 159
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 64 706
95 % 37 64 860 Flexibility: No
Max RMSD: 3.2, Avg RMSD: 0.4
PDBFlex
90 % 37 64 892
70 % 37 64 937
50 % 37 64 987
40 % 37 64 1008
30 % 37 64 992
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1055
95 % 36 47 1266 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 47 1293
70 % 36 47 1321
50 % 39 74 838
40 % 39 79 806
30 % 39 79 814
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 42 1212
95 % 33 42 1444 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 33 42 1467
70 % 33 42 1482
50 % 34 46 1333
40 % 34 46 1322
30 % 34 98 628

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1VQO 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
2 1VQ8 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
3 1S72 9 G Acidic ribosomal protein P0 homolog 2238
4 1JJ2 9 G RIBOSOMAL PROTEIN L10 2238
5 1YHQ 9 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
6 1VQP 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
7 1VQM 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
8 3CC2 7 G 50S ribosomal protein L10E 2238
9 1VQL 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
10 1VQK 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
11 1VQN 11 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
12 1YIJ 9 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
13 1YI2 9 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
14 1VQ9 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
15 1VQ7 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
16 3CCM 7 G 50S ribosomal protein L10E 2238
17 1VQ5 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
18 3CC7 7 G 50S ribosomal protein L10E 2238
19 1YIT 13 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
20 3CCE 7 G 50S ribosomal protein L10E 2238
21 3G6E 8 G 50S ribosomal protein L10E 2238
22 3CPW 9 G 50S ribosomal protein L10E 2238
23 3CCU 7 G 50S ribosomal protein L10E 2238
24 1VQ6 11 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
25 1M90 10 I RIBOSOMAL PROTEIN L10 2238
26 3CCL 7 G 50S ribosomal protein L10E 2238
27 1YJW 13 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
28 1YJ9 9 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
29 3CD6 7 G 50S ribosomal protein L10E 2238
30 3CCV 7 G 50S ribosomal protein L10E 2238
31 3CC4 7 G 50S ribosomal protein L10E 2238
32 2OTL 9 G 50S ribosomal protein L10E 2238
33 3G71 8 G 50S ribosomal protein L10E 2238
34 1VQ4 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
35 1YJN 9 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
36 3CMA 7 G 50S ribosomal protein L10E 2238
37 3CCS 7 G 50S ribosomal protein L10E 2238
38 3CCQ 7 G 50S ribosomal protein L10E 2238
39 3I56 7 G 50S ribosomal protein L10E 2238
40 3CCR 7 G 50S ribosomal protein L10E 2238
41 2OTJ 9 G 50S ribosomal protein L10E 2238
42 1KQS 11 G RIBOSOMAL PROTEIN L10 2238
43 3CXC 10 G RIBOSOMAL PROTEIN L10 2238
44 1QVG 10 G 50S RIBOSOMAL PROTEIN L10E 2238
45 3CME 7 G 50S ribosomal protein L10E 2238
46 2QEX 9 G Acidic ribosomal protein P0 homolog 2238
47 1KC8 9 I RIBOSOMAL PROTEIN L10 2238
48 1N8R 9 I Acidic ribosomal protein P0 homolog 2238
49 1Q81 10 I Acidic ribosomal protein P0 homolog 2238
50 1Q82 10 I Acidic ribosomal protein P0 homolog 2238
51 1QVF 10 G 50S RIBOSOMAL PROTEIN L10E 2238
52 1NJI 9 I Acidic ribosomal protein P0 homolog 2238
53 1K73 9 I RIBOSOMAL PROTEIN L10 2238
54 1K9M 9 I RIBOSOMAL PROTEIN L10 2238
55 1KD1 9 I RIBOSOMAL PROTEIN L10 2238
56 3I55 8 G 50S ribosomal protein L10E 2238
57 1K8A 9 I RIBOSOMAL PROTEIN L10 2238
58 1Q86 10 I Acidic ribosomal protein P0 homolog 2238
59 1M1K 9 I RIBOSOMAL PROTEIN L10 2238
60 3G4S 8 G 50S ribosomal protein L10 2238
61 3CCJ 7 G 50S ribosomal protein L10E 2238
62 1W2B 12 G 50S RIBOSOMAL PROTEIN L10E 2238
63 2QA4 9 G ACIDIC RIBOSOMAL PROTEIN P0 HOMO 2238
64 1Q7Y 10 I Acidic ribosomal protein P0 homolog 2238