Sequence Similarity Clusters for the Entities in PDB 3CCS

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 47 980
95 % 39 68 747 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 771
70 % 39 68 819
50 % 39 189 208
40 % 39 189 231
30 % 39 189 248
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 521
95 % 39 74 651 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 670
70 % 39 74 714
50 % 39 74 782
40 % 40 78 780
30 % 40 78 776
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 595
95 % 39 68 732 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 68 757
70 % 39 68 804
50 % 39 199 202
40 % 54 591 21
30 % 54 591 37
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 526
95 % 39 74 660 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 683
70 % 39 74 727
50 % 39 74 790
40 % 39 196 223
30 % 39 196 239
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 20 2888
95 % 36 47 1182 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 36 47 1203
70 % 39 68 805
50 % 39 198 205
40 % 39 198 222
30 % 39 198 238
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 518
95 % 39 74 646 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 39 74 671
70 % 39 74 715
50 % 39 76 761
40 % 39 76 793
30 % 39 79 760
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 608
95 % 39 68 749 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 774
70 % 39 68 821
50 % 39 70 841
40 % 39 70 874
30 % 39 70 860
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 979
95 % 39 68 752 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 777
70 % 39 68 824
50 % 39 68 880
40 % 39 72 839
30 % 39 72 840
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 596
95 % 39 68 733 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 758
70 % 39 68 806
50 % 39 70 850
40 % 39 70 881
30 % 39 71 854
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 625
95 % 39 68 740 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 764
70 % 39 68 813
50 % 39 68 869
40 % 39 68 896
30 % 39 196 240
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 531
95 % 39 74 662 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 39 74 685
70 % 39 74 731
50 % 39 77 751
40 % 53 455 46
30 % 53 455 63
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 627
95 % 39 74 658 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 39 74 681
70 % 39 74 725
50 % 39 74 789
40 % 39 204 214
30 % 39 204 231
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 522
95 % 39 74 653 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 676
70 % 39 74 721
50 % 39 205 197
40 % 39 206 212
30 % 39 206 230
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 70 568
95 % 37 70 703 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 37 70 728
70 % 37 70 774
50 % 37 70 842
40 % 37 70 868
30 % 37 70 862
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 523
95 % 39 74 654 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 677
70 % 39 74 722
50 % 39 74 786
40 % 53 415 52
30 % 53 441 66
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 602
95 % 39 68 741 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 765
70 % 39 68 814
50 % 39 68 870
40 % 39 70 872
30 % 39 71 853
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 609
95 % 39 68 750 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 775
70 % 39 68 822
50 % 39 68 878
40 % 39 68 902
30 % 39 70 867
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 63 680
95 % 36 63 834 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 63 863
70 % 36 63 901
50 % 36 63 949
40 % 36 63 969
30 % 36 63 954
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 17 3619
95 % 11 17 3977 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 11 17 4029
70 % 11 17 3953
50 % 11 17 3856
40 % 11 17 3662
30 % 11 17 3353
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 611
95 % 39 68 734 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 759
70 % 39 68 807
50 % 39 69 852
40 % 39 69 883
30 % 39 69 870
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 624
95 % 39 68 739 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 763
70 % 39 68 812
50 % 39 191 207
40 % 39 191 228
30 % 39 191 245
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 594
95 % 39 68 731 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 756
70 % 39 68 803
50 % 39 68 864
40 % 39 186 235
30 % 39 186 250
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 23 2511
95 % 39 74 650 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 74 674
70 % 39 74 717
50 % 39 74 781
40 % 39 76 796
30 % 40 78 775
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 524
95 % 39 74 656 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 39 74 680
70 % 39 74 724
50 % 39 74 788
40 % 40 198 220
30 % 40 198 236
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 607
95 % 39 68 748 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 772
70 % 39 68 801
50 % 39 68 875
40 % 39 196 224
30 % 54 581 40
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 967
95 % 36 47 1177 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 39 68 755
70 % 39 68 802
50 % 56 107 392
40 % 63 128 309
30 % 77 271 153
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 64 657
95 % 37 64 798 Flexibility: No
Max RMSD: 3.2, Avg RMSD: 0.4
PDBFlex
90 % 37 64 828
70 % 37 64 870
50 % 37 64 928
40 % 37 64 946
30 % 37 64 934
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 974
95 % 36 47 1179 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 47 1200
70 % 36 47 1227
50 % 39 74 783
40 % 39 79 754
30 % 39 79 764
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 42 1111
95 % 33 42 1328 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 33 42 1352
70 % 33 42 1372
50 % 34 46 1247
40 % 34 46 1240
30 % 34 89 639

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1VQO 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
2 1VQ8 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
3 1S72 9 G Acidic ribosomal protein P0 homolog 2238
4 1JJ2 9 G RIBOSOMAL PROTEIN L10 2238
5 1YHQ 9 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
6 1VQP 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
7 1VQM 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
8 3CC2 7 G 50S ribosomal protein L10E 2238
9 1VQL 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
10 1VQK 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
11 1VQN 11 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
12 1YIJ 9 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
13 1YI2 9 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
14 1VQ9 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
15 1VQ7 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
16 3CCM 7 G 50S ribosomal protein L10E 2238
17 1VQ5 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
18 3CC7 7 G 50S ribosomal protein L10E 2238
19 1YIT 13 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
20 3CCE 7 G 50S ribosomal protein L10E 2238
21 3G6E 8 G 50S ribosomal protein L10E 2238
22 3CPW 9 G 50S ribosomal protein L10E 2238
23 3CCU 7 G 50S ribosomal protein L10E 2238
24 1VQ6 11 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
25 1M90 10 I RIBOSOMAL PROTEIN L10 2238
26 3CCL 7 G 50S ribosomal protein L10E 2238
27 1YJW 13 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
28 1YJ9 9 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
29 3CD6 7 G 50S ribosomal protein L10E 2238
30 3CCV 7 G 50S ribosomal protein L10E 2238
31 3CC4 7 G 50S ribosomal protein L10E 2238
32 2OTL 9 G 50S ribosomal protein L10E 2238
33 3G71 8 G 50S ribosomal protein L10E 2238
34 1VQ4 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
35 1YJN 9 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
36 3CMA 7 G 50S ribosomal protein L10E 2238
37 3CCS 7 G 50S ribosomal protein L10E 2238
38 3CCQ 7 G 50S ribosomal protein L10E 2238
39 3I56 7 G 50S ribosomal protein L10E 2238
40 3CCR 7 G 50S ribosomal protein L10E 2238
41 2OTJ 9 G 50S ribosomal protein L10E 2238
42 1KQS 11 G RIBOSOMAL PROTEIN L10 2238
43 3CXC 10 G RIBOSOMAL PROTEIN L10 2238
44 1QVG 10 G 50S RIBOSOMAL PROTEIN L10E 2238
45 3CME 7 G 50S ribosomal protein L10E 2238
46 2QEX 9 G Acidic ribosomal protein P0 homolog 2238
47 1KC8 9 I RIBOSOMAL PROTEIN L10 2238
48 1N8R 9 I Acidic ribosomal protein P0 homolog 2238
49 1Q81 10 I Acidic ribosomal protein P0 homolog 2238
50 1Q82 10 I Acidic ribosomal protein P0 homolog 2238
51 1QVF 10 G 50S RIBOSOMAL PROTEIN L10E 2238
52 1NJI 9 I Acidic ribosomal protein P0 homolog 2238
53 1K73 9 I RIBOSOMAL PROTEIN L10 2238
54 1K9M 9 I RIBOSOMAL PROTEIN L10 2238
55 1KD1 9 I RIBOSOMAL PROTEIN L10 2238
56 3I55 8 G 50S ribosomal protein L10E 2238
57 1K8A 9 I RIBOSOMAL PROTEIN L10 2238
58 1Q86 10 I Acidic ribosomal protein P0 homolog 2238
59 1M1K 9 I RIBOSOMAL PROTEIN L10 2238
60 3G4S 8 G 50S ribosomal protein L10 2238
61 3CCJ 7 G 50S ribosomal protein L10E 2238
62 1W2B 12 G 50S RIBOSOMAL PROTEIN L10E 2238
63 2QA4 9 G ACIDIC RIBOSOMAL PROTEIN P0 HOMO 2238
64 1Q7Y 10 I Acidic ribosomal protein P0 homolog 2238