Sequence Similarity Clusters for the Entities in PDB 3CCS

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 43 1194
95 % 39 68 813 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 843
70 % 39 68 893
50 % 39 213 207
40 % 39 213 226
30 % 39 213 244
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 592
95 % 39 74 715 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 742
70 % 39 74 787
50 % 39 74 848
40 % 40 78 833
30 % 40 78 831
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 659
95 % 39 68 800 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 68 830
70 % 39 68 877
50 % 39 223 204
40 % 54 661 25
30 % 54 661 39
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 596
95 % 39 74 730 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 757
70 % 39 74 800
50 % 39 74 857
40 % 39 220 222
30 % 39 220 241
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 20 3146
95 % 36 47 1285 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 36 47 1310
70 % 39 68 885
50 % 39 222 205
40 % 39 222 221
30 % 39 222 239
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 587
95 % 39 74 717 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 39 74 745
70 % 39 74 789
50 % 39 76 819
40 % 39 76 852
30 % 39 79 819
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 670
95 % 39 68 814 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 844
70 % 39 68 895
50 % 39 70 899
40 % 39 70 929
30 % 39 70 916
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1068
95 % 39 68 818 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 848
70 % 39 68 898
50 % 39 68 944
40 % 39 72 902
30 % 39 72 903
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 664
95 % 39 68 805 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 835
70 % 39 68 884
50 % 39 70 910
40 % 39 70 943
30 % 39 71 910
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 681
95 % 39 68 803 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 833
70 % 39 68 882
50 % 39 68 934
40 % 39 68 962
30 % 39 220 240
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 599
95 % 39 74 731 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 39 74 760
70 % 39 74 806
50 % 39 77 809
40 % 53 502 39
30 % 53 502 60
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 683
95 % 39 74 727 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 39 74 754
70 % 39 74 797
50 % 39 74 856
40 % 39 228 212
30 % 39 228 232
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 593
95 % 39 74 723 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 750
70 % 39 74 794
50 % 39 229 202
40 % 39 230 210
30 % 39 230 230
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 70 630
95 % 37 70 772 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 37 70 803
70 % 37 70 847
50 % 37 70 901
40 % 37 70 930
30 % 37 70 917
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 594
95 % 39 74 724 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 751
70 % 39 74 795
50 % 39 74 851
40 % 53 456 59
30 % 53 482 71
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 663
95 % 39 68 804 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 834
70 % 39 68 883
50 % 39 68 935
40 % 39 70 934
30 % 39 71 909
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 660
95 % 39 68 815 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 845
70 % 39 68 896
50 % 39 68 942
40 % 39 68 969
30 % 39 70 925
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 63 735
95 % 36 63 903 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 63 931
70 % 36 63 972
50 % 36 63 1023
40 % 36 63 1042
30 % 36 63 1018
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 17 3941
95 % 11 17 4309 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 11 17 4341
70 % 11 17 4245
50 % 11 17 4090
40 % 11 17 3883
30 % 11 17 3543
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 671
95 % 39 68 801 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 831
70 % 39 68 878
50 % 39 69 911
40 % 39 69 945
30 % 39 69 930
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 682
95 % 39 68 807 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 837
70 % 39 68 888
50 % 39 215 206
40 % 39 215 225
30 % 39 215 243
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 657
95 % 39 68 798 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 828
70 % 39 68 875
50 % 39 68 927
40 % 39 210 230
30 % 39 210 248
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 23 2690
95 % 39 74 718 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 74 746
70 % 39 74 790
50 % 39 74 844
40 % 39 76 847
30 % 40 78 829
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 595
95 % 39 74 725 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 39 74 753
70 % 39 74 796
50 % 39 74 855
40 % 40 222 218
30 % 40 222 238
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 667
95 % 39 68 811 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 841
70 % 39 68 873
50 % 39 68 939
40 % 39 220 223
30 % 54 650 42
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1048
95 % 36 47 1269 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 39 68 827
70 % 39 68 874
50 % 56 108 418
40 % 63 133 347
30 % 77 300 158
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 64 712
95 % 37 64 866 Flexibility: No
Max RMSD: 3.2, Avg RMSD: 0.4
PDBFlex
90 % 37 64 897
70 % 37 64 942
50 % 37 64 998
40 % 37 64 1017
30 % 37 64 998
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1062
95 % 36 47 1276 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 47 1303
70 % 36 47 1329
50 % 39 74 849
40 % 39 79 811
30 % 39 79 820
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 42 1220
95 % 33 42 1456 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 33 42 1475
70 % 33 42 1490
50 % 34 46 1341
40 % 34 46 1331
30 % 34 98 634

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1VQO 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
2 1VQ8 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
3 1S72 9 G Acidic ribosomal protein P0 homolog 2238
4 1JJ2 9 G RIBOSOMAL PROTEIN L10 2238
5 1YHQ 9 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
6 1VQP 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
7 1VQM 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
8 3CC2 7 G 50S ribosomal protein L10E 2238
9 1VQL 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
10 1VQK 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
11 1VQN 11 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
12 1YIJ 9 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
13 1YI2 9 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
14 1VQ9 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
15 1VQ7 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
16 3CCM 7 G 50S ribosomal protein L10E 2238
17 1VQ5 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
18 3CC7 7 G 50S ribosomal protein L10E 2238
19 1YIT 13 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
20 3CCE 7 G 50S ribosomal protein L10E 2238
21 3G6E 8 G 50S ribosomal protein L10E 2238
22 3CPW 9 G 50S ribosomal protein L10E 2238
23 3CCU 7 G 50S ribosomal protein L10E 2238
24 1VQ6 11 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
25 1M90 10 I RIBOSOMAL PROTEIN L10 2238
26 3CCL 7 G 50S ribosomal protein L10E 2238
27 1YJW 13 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
28 1YJ9 9 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
29 3CD6 7 G 50S ribosomal protein L10E 2238
30 3CCV 7 G 50S ribosomal protein L10E 2238
31 3CC4 7 G 50S ribosomal protein L10E 2238
32 2OTL 9 G 50S ribosomal protein L10E 2238
33 3G71 8 G 50S ribosomal protein L10E 2238
34 1VQ4 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
35 1YJN 9 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
36 3CMA 7 G 50S ribosomal protein L10E 2238
37 3CCS 7 G 50S ribosomal protein L10E 2238
38 3CCQ 7 G 50S ribosomal protein L10E 2238
39 3I56 7 G 50S ribosomal protein L10E 2238
40 3CCR 7 G 50S ribosomal protein L10E 2238
41 2OTJ 9 G 50S ribosomal protein L10E 2238
42 1KQS 11 G RIBOSOMAL PROTEIN L10 2238
43 3CXC 10 G RIBOSOMAL PROTEIN L10 2238
44 1QVG 10 G 50S RIBOSOMAL PROTEIN L10E 2238
45 3CME 7 G 50S ribosomal protein L10E 2238
46 2QEX 9 G Acidic ribosomal protein P0 homolog 2238
47 1KC8 9 I RIBOSOMAL PROTEIN L10 2238
48 1N8R 9 I Acidic ribosomal protein P0 homolog 2238
49 1Q81 10 I Acidic ribosomal protein P0 homolog 2238
50 1Q82 10 I Acidic ribosomal protein P0 homolog 2238
51 1QVF 10 G 50S RIBOSOMAL PROTEIN L10E 2238
52 1NJI 9 I Acidic ribosomal protein P0 homolog 2238
53 1K73 9 I RIBOSOMAL PROTEIN L10 2238
54 1K9M 9 I RIBOSOMAL PROTEIN L10 2238
55 1KD1 9 I RIBOSOMAL PROTEIN L10 2238
56 3I55 8 G 50S ribosomal protein L10E 2238
57 1K8A 9 I RIBOSOMAL PROTEIN L10 2238
58 1Q86 10 I Acidic ribosomal protein P0 homolog 2238
59 1M1K 9 I RIBOSOMAL PROTEIN L10 2238
60 3G4S 8 G 50S ribosomal protein L10 2238
61 3CCJ 7 G 50S ribosomal protein L10E 2238
62 1W2B 12 G 50S RIBOSOMAL PROTEIN L10E 2238
63 2QA4 9 G ACIDIC RIBOSOMAL PROTEIN P0 HOMO 2238
64 1Q7Y 10 I Acidic ribosomal protein P0 homolog 2238