Sequence Similarity Clusters for the Entities in PDB 3CCS

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 47 985
95 % 39 68 752 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 776
70 % 39 68 824
50 % 39 192 208
40 % 39 192 230
30 % 39 192 246
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 530
95 % 39 74 655 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 672
70 % 39 74 718
50 % 39 74 783
40 % 40 78 784
30 % 40 78 783
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 599
95 % 39 68 736 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 68 762
70 % 39 68 809
50 % 39 202 200
40 % 54 604 22
30 % 54 604 36
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 535
95 % 39 74 664 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 686
70 % 39 74 731
50 % 39 74 791
40 % 39 199 222
30 % 39 199 238
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 20 2900
95 % 36 47 1184 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 36 47 1207
70 % 39 68 810
50 % 39 201 203
40 % 39 201 220
30 % 39 201 236
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 527
95 % 39 74 650 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 39 74 674
70 % 39 74 719
50 % 39 76 762
40 % 39 76 796
30 % 39 79 768
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 612
95 % 39 68 754 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 779
70 % 39 68 826
50 % 39 70 843
40 % 39 70 877
30 % 39 70 869
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 984
95 % 39 68 757 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 782
70 % 39 68 829
50 % 39 68 884
40 % 39 72 842
30 % 39 72 850
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 600
95 % 39 68 737 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 763
70 % 39 68 811
50 % 39 70 853
40 % 39 70 885
30 % 39 71 863
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 626
95 % 39 68 744 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 769
70 % 39 68 817
50 % 39 68 873
40 % 39 68 899
30 % 39 199 239
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 540
95 % 39 74 666 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 39 74 688
70 % 39 74 735
50 % 39 77 753
40 % 53 465 43
30 % 53 465 62
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 629
95 % 39 74 662 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 39 74 684
70 % 39 74 729
50 % 39 74 790
40 % 39 207 212
30 % 39 207 229
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 531
95 % 39 74 657 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 679
70 % 39 74 725
50 % 39 208 194
40 % 39 209 211
30 % 39 209 228
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 70 571
95 % 37 70 706 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 37 70 732
70 % 37 70 778
50 % 37 70 845
40 % 37 70 870
30 % 37 70 871
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 532
95 % 39 74 658 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 680
70 % 39 74 726
50 % 39 74 787
40 % 53 425 52
30 % 53 451 66
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 606
95 % 39 68 745 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 770
70 % 39 68 818
50 % 39 68 874
40 % 39 70 874
30 % 39 71 862
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 613
95 % 39 68 755 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 780
70 % 39 68 827
50 % 39 68 882
40 % 39 68 906
30 % 39 70 876
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 63 682
95 % 36 63 838 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 63 869
70 % 36 63 909
50 % 36 63 954
40 % 36 63 974
30 % 36 63 963
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 17 3646
95 % 11 17 4003 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 11 17 4055
70 % 11 17 3980
50 % 11 17 3879
40 % 11 17 3685
30 % 11 17 3371
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 615
95 % 39 68 738 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 764
70 % 39 68 812
50 % 39 69 855
40 % 39 69 887
30 % 39 69 880
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 628
95 % 39 68 748 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 773
70 % 39 68 821
50 % 39 194 207
40 % 39 194 228
30 % 39 194 244
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 598
95 % 39 68 735 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 761
70 % 39 68 808
50 % 39 68 867
40 % 39 189 233
30 % 39 189 250
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 23 2525
95 % 39 74 654 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 74 677
70 % 39 74 721
50 % 39 74 782
40 % 39 76 799
30 % 40 78 781
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 533
95 % 39 74 660 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 39 74 683
70 % 39 74 728
50 % 39 74 789
40 % 40 201 219
30 % 40 201 234
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 611
95 % 39 68 753 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 777
70 % 39 68 805
50 % 39 68 879
40 % 39 199 223
30 % 54 593 40
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 972
95 % 36 47 1179 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 39 68 759
70 % 39 68 806
50 % 56 107 396
40 % 63 128 313
30 % 77 274 154
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 64 659
95 % 37 64 802 Flexibility: No
Max RMSD: 3.2, Avg RMSD: 0.4
PDBFlex
90 % 37 64 833
70 % 37 64 876
50 % 37 64 933
40 % 37 64 951
30 % 37 64 942
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 979
95 % 36 47 1181 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 47 1204
70 % 36 47 1233
50 % 39 74 784
40 % 39 79 758
30 % 39 79 772
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 42 1114
95 % 33 42 1336 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 33 42 1359
70 % 33 42 1378
50 % 34 46 1252
40 % 34 46 1245
30 % 34 89 646

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1VQO 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
2 1VQ8 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
3 1S72 9 G Acidic ribosomal protein P0 homolog 2238
4 1JJ2 9 G RIBOSOMAL PROTEIN L10 2238
5 1YHQ 9 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
6 1VQP 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
7 1VQM 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
8 3CC2 7 G 50S ribosomal protein L10E 2238
9 1VQL 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
10 1VQK 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
11 1VQN 11 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
12 1YIJ 9 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
13 1YI2 9 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
14 1VQ9 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
15 1VQ7 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
16 3CCM 7 G 50S ribosomal protein L10E 2238
17 1VQ5 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
18 3CC7 7 G 50S ribosomal protein L10E 2238
19 1YIT 13 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
20 3CCE 7 G 50S ribosomal protein L10E 2238
21 3G6E 8 G 50S ribosomal protein L10E 2238
22 3CPW 9 G 50S ribosomal protein L10E 2238
23 3CCU 7 G 50S ribosomal protein L10E 2238
24 1VQ6 11 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
25 1M90 10 I RIBOSOMAL PROTEIN L10 2238
26 3CCL 7 G 50S ribosomal protein L10E 2238
27 1YJW 13 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
28 1YJ9 9 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
29 3CD6 7 G 50S ribosomal protein L10E 2238
30 3CCV 7 G 50S ribosomal protein L10E 2238
31 3CC4 7 G 50S ribosomal protein L10E 2238
32 2OTL 9 G 50S ribosomal protein L10E 2238
33 3G71 8 G 50S ribosomal protein L10E 2238
34 1VQ4 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
35 1YJN 9 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
36 3CMA 7 G 50S ribosomal protein L10E 2238
37 3CCS 7 G 50S ribosomal protein L10E 2238
38 3CCQ 7 G 50S ribosomal protein L10E 2238
39 3I56 7 G 50S ribosomal protein L10E 2238
40 3CCR 7 G 50S ribosomal protein L10E 2238
41 2OTJ 9 G 50S ribosomal protein L10E 2238
42 1KQS 11 G RIBOSOMAL PROTEIN L10 2238
43 3CXC 10 G RIBOSOMAL PROTEIN L10 2238
44 1QVG 10 G 50S RIBOSOMAL PROTEIN L10E 2238
45 3CME 7 G 50S ribosomal protein L10E 2238
46 2QEX 9 G Acidic ribosomal protein P0 homolog 2238
47 1KC8 9 I RIBOSOMAL PROTEIN L10 2238
48 1N8R 9 I Acidic ribosomal protein P0 homolog 2238
49 1Q81 10 I Acidic ribosomal protein P0 homolog 2238
50 1Q82 10 I Acidic ribosomal protein P0 homolog 2238
51 1QVF 10 G 50S RIBOSOMAL PROTEIN L10E 2238
52 1NJI 9 I Acidic ribosomal protein P0 homolog 2238
53 1K73 9 I RIBOSOMAL PROTEIN L10 2238
54 1K9M 9 I RIBOSOMAL PROTEIN L10 2238
55 1KD1 9 I RIBOSOMAL PROTEIN L10 2238
56 3I55 8 G 50S ribosomal protein L10E 2238
57 1K8A 9 I RIBOSOMAL PROTEIN L10 2238
58 1Q86 10 I Acidic ribosomal protein P0 homolog 2238
59 1M1K 9 I RIBOSOMAL PROTEIN L10 2238
60 3G4S 8 G 50S ribosomal protein L10 2238
61 3CCJ 7 G 50S ribosomal protein L10E 2238
62 1W2B 12 G 50S RIBOSOMAL PROTEIN L10E 2238
63 2QA4 9 G ACIDIC RIBOSOMAL PROTEIN P0 HOMO 2238
64 1Q7Y 10 I Acidic ribosomal protein P0 homolog 2238