Sequence Similarity Clusters for the Entities in PDB 3CCS

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 43 1162
95 % 39 68 796 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 828
70 % 39 68 878
50 % 39 205 210
40 % 39 205 230
30 % 39 205 248
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 576
95 % 39 74 708 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 724
70 % 39 74 770
50 % 39 74 827
40 % 40 78 823
30 % 40 78 819
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 641
95 % 39 68 781 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 68 812
70 % 39 68 862
50 % 39 215 204
40 % 54 647 23
30 % 54 647 40
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 581
95 % 39 74 717 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 741
70 % 39 74 785
50 % 39 74 838
40 % 39 212 225
30 % 39 212 243
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 20 3081
95 % 36 47 1263 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 36 47 1287
70 % 39 68 863
50 % 39 214 205
40 % 39 214 224
30 % 39 214 241
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 572
95 % 39 74 703 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 39 74 728
70 % 39 74 774
50 % 39 76 805
40 % 39 76 836
30 % 39 79 805
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 654
95 % 39 68 797 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 829
70 % 39 68 880
50 % 39 70 886
40 % 39 70 915
30 % 39 70 906
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1051
95 % 39 68 802 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 834
70 % 39 68 883
50 % 39 68 931
40 % 39 72 887
30 % 39 72 889
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 642
95 % 39 68 782 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 813
70 % 39 68 864
50 % 39 70 896
40 % 39 70 929
30 % 39 71 901
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 669
95 % 39 68 787 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 819
70 % 39 68 869
50 % 39 68 921
40 % 39 68 949
30 % 39 212 242
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 584
95 % 39 74 718 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 39 74 744
70 % 39 74 790
50 % 39 77 796
40 % 53 496 40
30 % 53 496 60
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 671
95 % 39 74 715 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 39 74 739
70 % 39 74 783
50 % 39 74 837
40 % 39 220 219
30 % 39 220 237
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 577
95 % 39 74 710 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 734
70 % 39 74 779
50 % 39 221 203
40 % 39 222 218
30 % 39 222 235
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 70 615
95 % 37 70 755 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 37 70 787
70 % 37 70 829
50 % 37 70 887
40 % 37 70 916
30 % 37 70 907
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 578
95 % 39 74 711 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 735
70 % 39 74 780
50 % 39 74 830
40 % 53 451 51
30 % 53 477 65
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 647
95 % 39 68 788 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 820
70 % 39 68 870
50 % 39 68 922
40 % 39 70 919
30 % 39 71 900
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 643
95 % 39 68 798 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 830
70 % 39 68 881
50 % 39 68 929
40 % 39 68 956
30 % 39 70 913
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 63 723
95 % 36 63 883 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 63 912
70 % 36 63 953
50 % 36 63 1003
40 % 36 63 1024
30 % 36 63 1004
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 17 3880
95 % 11 17 4238 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 11 17 4277
70 % 11 17 4185
50 % 11 17 4036
40 % 11 17 3834
30 % 11 17 3495
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 655
95 % 39 68 783 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 814
70 % 39 68 865
50 % 39 69 899
40 % 39 69 933
30 % 39 69 918
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 670
95 % 39 68 791 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 823
70 % 39 68 874
50 % 39 207 209
40 % 39 207 229
30 % 39 207 246
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 640
95 % 39 68 780 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 811
70 % 39 68 861
50 % 39 68 915
40 % 39 202 234
30 % 39 202 250
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 23 2651
95 % 39 74 702 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 74 727
70 % 39 74 773
50 % 39 74 823
40 % 39 76 835
30 % 40 78 815
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 580
95 % 39 74 713 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 39 74 738
70 % 39 74 782
50 % 39 74 835
40 % 40 214 221
30 % 40 214 239
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 652
95 % 39 68 795 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 827
70 % 39 68 858
50 % 39 68 927
40 % 39 212 226
30 % 54 636 41
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1032
95 % 36 47 1247 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 39 68 810
70 % 39 68 859
50 % 56 108 412
40 % 63 133 331
30 % 77 292 155
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 64 699
95 % 37 64 849 Flexibility: No
Max RMSD: 3.2, Avg RMSD: 0.4
PDBFlex
90 % 37 64 882
70 % 37 64 925
50 % 37 64 981
40 % 37 64 1002
30 % 37 64 981
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1045
95 % 36 47 1255 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 47 1281
70 % 36 47 1310
50 % 39 74 824
40 % 39 79 801
30 % 39 79 804
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 42 1202
95 % 33 42 1432 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 33 42 1454
70 % 33 42 1470
50 % 34 46 1324
40 % 34 46 1314
30 % 34 98 619

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1VQO 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
2 1VQ8 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
3 1S72 9 G Acidic ribosomal protein P0 homolog 2238
4 1JJ2 9 G RIBOSOMAL PROTEIN L10 2238
5 1YHQ 9 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
6 1VQP 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
7 1VQM 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
8 3CC2 7 G 50S ribosomal protein L10E 2238
9 1VQL 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
10 1VQK 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
11 1VQN 11 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
12 1YIJ 9 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
13 1YI2 9 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
14 1VQ9 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
15 1VQ7 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
16 3CCM 7 G 50S ribosomal protein L10E 2238
17 1VQ5 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
18 3CC7 7 G 50S ribosomal protein L10E 2238
19 1YIT 13 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
20 3CCE 7 G 50S ribosomal protein L10E 2238
21 3G6E 8 G 50S ribosomal protein L10E 2238
22 3CPW 9 G 50S ribosomal protein L10E 2238
23 3CCU 7 G 50S ribosomal protein L10E 2238
24 1VQ6 11 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
25 1M90 10 I RIBOSOMAL PROTEIN L10 2238
26 3CCL 7 G 50S ribosomal protein L10E 2238
27 1YJW 13 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
28 1YJ9 9 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
29 3CD6 7 G 50S ribosomal protein L10E 2238
30 3CCV 7 G 50S ribosomal protein L10E 2238
31 3CC4 7 G 50S ribosomal protein L10E 2238
32 2OTL 9 G 50S ribosomal protein L10E 2238
33 3G71 8 G 50S ribosomal protein L10E 2238
34 1VQ4 10 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
35 1YJN 9 G ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG 2238
36 3CMA 7 G 50S ribosomal protein L10E 2238
37 3CCS 7 G 50S ribosomal protein L10E 2238
38 3CCQ 7 G 50S ribosomal protein L10E 2238
39 3I56 7 G 50S ribosomal protein L10E 2238
40 3CCR 7 G 50S ribosomal protein L10E 2238
41 2OTJ 9 G 50S ribosomal protein L10E 2238
42 1KQS 11 G RIBOSOMAL PROTEIN L10 2238
43 3CXC 10 G RIBOSOMAL PROTEIN L10 2238
44 1QVG 10 G 50S RIBOSOMAL PROTEIN L10E 2238
45 3CME 7 G 50S ribosomal protein L10E 2238
46 2QEX 9 G Acidic ribosomal protein P0 homolog 2238
47 1KC8 9 I RIBOSOMAL PROTEIN L10 2238
48 1N8R 9 I Acidic ribosomal protein P0 homolog 2238
49 1Q81 10 I Acidic ribosomal protein P0 homolog 2238
50 1Q82 10 I Acidic ribosomal protein P0 homolog 2238
51 1QVF 10 G 50S RIBOSOMAL PROTEIN L10E 2238
52 1NJI 9 I Acidic ribosomal protein P0 homolog 2238
53 1K73 9 I RIBOSOMAL PROTEIN L10 2238
54 1K9M 9 I RIBOSOMAL PROTEIN L10 2238
55 1KD1 9 I RIBOSOMAL PROTEIN L10 2238
56 3I55 8 G 50S ribosomal protein L10E 2238
57 1K8A 9 I RIBOSOMAL PROTEIN L10 2238
58 1Q86 10 I Acidic ribosomal protein P0 homolog 2238
59 1M1K 9 I RIBOSOMAL PROTEIN L10 2238
60 3G4S 8 G 50S ribosomal protein L10 2238
61 3CCJ 7 G 50S ribosomal protein L10E 2238
62 1W2B 12 G 50S RIBOSOMAL PROTEIN L10E 2238
63 2QA4 9 G ACIDIC RIBOSOMAL PROTEIN P0 HOMO 2238
64 1Q7Y 10 I Acidic ribosomal protein P0 homolog 2238