Sequence Similarity Clusters for the Entities in PDB 3CCS

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 43 1152
95 % 39 68 789 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 821
70 % 39 68 871
50 % 39 203 209
40 % 39 203 230
30 % 39 203 247
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 567
95 % 39 74 699 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 716
70 % 39 74 762
50 % 39 74 819
40 % 40 78 811
30 % 40 78 810
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 634
95 % 39 68 774 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 68 805
70 % 39 68 855
50 % 39 213 201
40 % 54 642 23
30 % 54 642 39
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 572
95 % 39 74 708 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 733
70 % 39 74 777
50 % 39 74 830
40 % 39 210 222
30 % 39 210 242
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 20 3057
95 % 36 47 1251 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 36 47 1278
70 % 39 68 856
50 % 39 212 202
40 % 39 212 221
30 % 39 212 240
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 563
95 % 39 74 694 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 39 74 720
70 % 39 74 766
50 % 39 76 793
40 % 39 76 825
30 % 39 79 798
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 647
95 % 39 68 790 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 822
70 % 39 68 873
50 % 39 70 877
40 % 39 70 903
30 % 39 70 894
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1039
95 % 39 68 795 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 827
70 % 39 68 876
50 % 39 68 925
40 % 39 72 877
30 % 39 72 880
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 635
95 % 39 68 775 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 806
70 % 39 68 857
50 % 39 70 888
40 % 39 70 919
30 % 39 71 889
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 662
95 % 39 68 780 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 812
70 % 39 68 862
50 % 39 68 916
40 % 39 68 942
30 % 39 210 241
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 575
95 % 39 74 709 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 39 74 736
70 % 39 74 783
50 % 39 77 784
40 % 53 493 40
30 % 53 493 60
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 665
95 % 39 74 706 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 39 74 731
70 % 39 74 775
50 % 39 74 829
40 % 39 218 216
30 % 39 218 236
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 568
95 % 39 74 701 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 726
70 % 39 74 771
50 % 39 219 200
40 % 39 220 214
30 % 39 220 235
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 70 607
95 % 37 70 745 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 37 70 777
70 % 37 70 820
50 % 37 70 878
40 % 37 70 904
30 % 37 70 896
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 569
95 % 39 74 702 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 727
70 % 39 74 772
50 % 39 74 822
40 % 53 448 52
30 % 53 474 65
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 639
95 % 39 68 781 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 813
70 % 39 68 863
50 % 39 68 917
40 % 39 70 909
30 % 39 71 888
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 636
95 % 39 68 791 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 823
70 % 39 68 874
50 % 39 68 924
40 % 39 68 949
30 % 39 70 903
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 63 717
95 % 36 63 877 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 63 907
70 % 36 63 947
50 % 36 63 995
40 % 36 63 1017
30 % 36 63 1001
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 17 3848
95 % 11 17 4206 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 11 17 4245
70 % 11 17 4156
50 % 11 17 4020
40 % 11 17 3813
30 % 11 17 3475
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 648
95 % 39 68 776 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 807
70 % 39 68 858
50 % 39 69 891
40 % 39 69 923
30 % 39 69 909
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 663
95 % 39 68 784 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 816
70 % 39 68 867
50 % 39 205 207
40 % 39 205 226
30 % 39 205 246
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 633
95 % 39 68 773 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 804
70 % 39 68 854
50 % 39 68 909
40 % 39 200 234
30 % 39 200 250
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 23 2623
95 % 39 74 693 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 74 719
70 % 39 74 765
50 % 39 74 814
40 % 39 76 824
30 % 40 78 808
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 571
95 % 39 74 704 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 39 74 730
70 % 39 74 774
50 % 39 74 828
40 % 40 212 220
30 % 40 212 238
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 644
95 % 39 68 788 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 820
70 % 39 68 851
50 % 39 68 922
40 % 39 210 224
30 % 54 631 40
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1019
95 % 36 47 1236 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 39 68 803
70 % 39 68 852
50 % 56 108 404
40 % 63 133 322
30 % 77 290 155
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 64 692
95 % 37 64 842 Flexibility: No
Max RMSD: 3.2, Avg RMSD: 0.4
PDBFlex
90 % 37 64 875
70 % 37 64 919
50 % 37 64 976
40 % 37 64 997
30 % 37 64 980
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1032
95 % 36 47 1243 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 47 1272
70 % 36 47 1301
50 % 39 74 815
40 % 39 79 790
30 % 39 79 797
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 42 1189
95 % 33 42 1417 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 33 42 1442
70 % 33 42 1458
50 % 34 46 1314
40 % 34 46 1303
30 % 34 98 608

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1XBI 1 A 50S ribosomal protein L7Ae 2190
2 2FC3 1 A 50S ribosomal protein L7Ae 56636
3 3PAF 1 A, B 50S ribosomal protein L7Ae 2190
4 1RA4 1 A 50S ribosomal protein L7Ae 2190
5 1SDS 2 A, B, C 50S ribosomal protein L7Ae 2190
6 2CZW 1 A 50S ribosomal protein L7Ae 53953
7 1PXW 1 A, B LSU ribosomal protein L7AE 29292
8 5XTM 1 A, C 50S ribosomal protein L7Ae 53953
9 3HAX 3 D 50S ribosomal protein L7Ae 2261
10 4V9F 8 F 50S ribosomal protein L7Ae 2238
11 4BW0 2 B 50S RIBOSOMAL PROTEIN L7AE K-TURN BINDING DOMAIN, RESIDUES 2-119 2234
12 1VQO 9 F 50S ribosomal protein L7AE 2238
13 1VQ8 9 F 50S ribosomal protein L7AE 2238
14 3LWR 3 C 50S ribosomal protein L7Ae 2261
15 1S72 8 F 50S ribosomal protein L7Ae 2238
16 1JJ2 8 F RIBOSOMAL PROTEIN L7AE 2238
17 1YHQ 8 F 50S ribosomal protein L7AE 2238
18 1VQP 9 F 50S ribosomal protein L7AE 2238
19 1VQM 9 F 50S ribosomal protein L7AE 2238
20 3CC2 6 F 50S ribosomal protein L7Ae 2238
21 1VQL 9 F 50S ribosomal protein L7AE 2238
22 1VQK 9 F 50S ribosomal protein L7AE 2238
23 3HJW 3 C 50S ribosomal protein L7Ae 2261
24 1VQN 10 F 50S ribosomal protein L7AE 2238
25 1YIJ 8 F 50S ribosomal protein L7AE 2238
26 1YI2 8 F 50S ribosomal protein L7AE 2238
27 3LWV 3 C 50S ribosomal protein L7Ae 2261
28 1VQ9 9 F 50S ribosomal protein L7AE 2238
29 2HVY 5 D 50S ribosomal protein L7Ae 2261
30 3LWP 3 C 50S ribosomal protein L7Ae 2261
31 1VQ7 9 F 50S ribosomal protein L7AE 2238
32 3CCM 6 F 50S ribosomal protein L7Ae 2238
33 1VQ5 9 F 50S ribosomal protein L7AE 2238
34 3CC7 6 F 50S ribosomal protein L7Ae 2238
35 1YIT 12 F 50S RIBOSOMAL PROTEIN L7AE 2238
36 3CCE 6 F 50S ribosomal protein L7Ae 2238
37 3G6E 7 F 50S ribosomal protein L7Ae 2238
38 3CPW 8 F 50S ribosomal protein L7Ae 2238
39 3CCU 6 F 50S ribosomal protein L7Ae 2238
40 1VQ6 10 F 50S ribosomal protein L7AE 2238
41 1M90 9 H RIBOSOMAL PROTEIN L7AE 2238
42 3CCL 6 F 50S ribosomal protein L7Ae 2238
43 1YJW 12 F 50S RIBOSOMAL PROTEIN L7AE 2238
44 1YJ9 8 F 50S ribosomal protein L7AE 2238
45 3CD6 6 F 50S ribosomal protein L7Ae 2238
46 3CCV 6 F 50S ribosomal protein L7Ae 2238
47 4C4W 2 C, G 50S RIBOSOMAL PROTEIN L7AE 2234
48 3CC4 6 F 50S ribosomal protein L7Ae 2238
49 2OTL 8 F 50S ribosomal protein L7Ae 2238
50 3G71 7 F 50S ribosomal protein L7Ae 2238
51 1FFK 7 E RIBOSOMAL PROTEIN L7AE 2238
52 1VQ4 9 F 50S ribosomal protein L7AE 2238
53 1YJN 8 F 50S ribosomal protein L7AE 2238
54 3CMA 6 F 50S ribosomal protein L7Ae 2238
55 3LWO 3 C 50S ribosomal protein L7Ae 2261
56 3CCS 6 F 50S ribosomal protein L7Ae 2238
57 3LWQ 3 C 50S ribosomal protein L7Ae 2261
58 3NVI 2 B, D 50S ribosomal protein L7Ae 2261
59 3CCQ 6 F 50S ribosomal protein L7Ae 2238
60 3I56 6 F 50S ribosomal protein L7Ae 2238
61 3CCR 6 F 50S ribosomal protein L7Ae 2238
62 2OTJ 8 F 50S ribosomal protein L7Ae 2238
63 1KQS 10 F RIBOSOMAL PROTEIN L7AE 2238
64 3OW2 8 F 50S ribosomal protein L7Ae 2238
65 3CXC 9 F RIBOSOMAL PROTEIN L7AE 2238
66 5G4U 2 C, D, G, H, K, L 50S RIBOSOMAL PROTEIN L7AE K-TURN BINDING DOMAIN, RESIDUES 2-119 2234
67 1QVG 9 F 50S ribosomal protein L7Ae 2238
68 3NMU 2 C, G 50S ribosomal protein L7Ae 2261
69 3CME 6 F 50S ribosomal protein L7Ae 2238
70 2QEX 8 F 50S ribosomal protein L7Ae 2238
71 5GIP 2 C, D, M, N 50S ribosomal protein L7Ae UNP residues 3-127 2287
72 5FJ4 2 C, G 50S RIBOSOMAL PROTEIN L7AE RNA BINDING DOMAIN, UNP RESIDUES 5-119 2234
73 1KC8 8 H RIBOSOMAL PROTEIN L7AE 2238
74 1RLG 2 A, B 50S ribosomal protein L7Ae 2234
75 6HCT 2 C, D, G 50S ribosomal protein L7Ae 2234
76 5G4V 2 C, D, G, H 50S RIBOSOMAL PROTEIN L7AE K-TURN BINDING DOMAIN, RESIDUES 2-119 2234
77 1N8R 8 H 50S ribosomal protein L7Ae 2238
78 1Q81 9 H 50S ribosomal protein L7Ae 2238
79 1Q82 9 H 50S ribosomal protein L7Ae 2238
80 1QVF 9 F 50S ribosomal protein L7Ae 2238
81 1NJI 8 H 50S ribosomal protein L7Ae 2238
82 1K73 8 H RIBOSOMAL PROTEIN L7AE 2238
83 1K9M 8 H RIBOSOMAL PROTEIN L7AE 2238
84 1KD1 8 H RIBOSOMAL PROTEIN L7AE 2238
85 3I55 7 F 50S ribosomal protein L7Ae 2238
86 1K8A 8 H RIBOSOMAL PROTEIN L7AE 2238
87 1Q86 9 H 50S ribosomal protein L7Ae 2238
88 1M1K 8 H RIBOSOMAL PROTEIN L7AE 2238
89 3G4S 7 F 50S ribosomal protein L7Ae 2238
90 5Y7M 1 A, C 50S ribosomal protein L7Ae 53953
91 3CCJ 6 F 50S ribosomal protein L7Ae 2238
92 1W2B 11 F 50S RIBOSOMAL PROTEIN L7AE 2238
93 2QA4 8 F 50S ribosomal protein L7Ae 2238
94 1Q7Y 9 H 50S ribosomal protein L7Ae 2238
95 3NVK 2 E, H 50S ribosomal protein L7Ae 2261
96 3PLA 2 C, D, L 50S ribosomal protein L7Ae 2287
97 5GIN 2 C, D, L 50S ribosomal protein L7Ae 2287
98 5DCV 1 A, C 50S ribosomal protein L7Ae 53953
99 5GIO 2 C, D, L 50S ribosomal protein L7Ae UNP residues 3-127 2287
100 3ID5 3 C, G 50S ribosomal protein L7Ae 2287
101 3HAY 4 D 50S ribosomal protein L7Ae 2261
102 5JPQ 9 U, V Snu13 209285
103 5JB3 18 3 50S ribosomal protein L7Ae 50S ribosomal protein L7AE model from Pyrococcus furiosus (PDB code 4V6U) used for fitting 29292
104 5JBH 3 3 50S ribosomal protein uL30 50S ribosomal protein L7AE model from Pyrococcus furiosus (PDB code 4V6U) used for fitting 29292
105 4BY9 3 D, G, J, M 50S RIBOSOMAL PROTEIN L7AE RESIDUES 3-123 2261
106 4V4N 12 AG, B3 30S ribosomal protein L7AE SEE REMARK 999 2190
107 4V6U 20 A3, B4, BG 50S ribosomal protein L7Ae 2261
108 4ADX 16 F RPL7AE 145262