Sequence Similarity Clusters for the Entities in PDB 3CCS

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 43 1107
95 % 39 68 777 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 803
70 % 39 68 856
50 % 39 192 213
40 % 39 192 234
30 % 39 192 249
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 541
95 % 39 74 679 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 695
70 % 39 74 740
50 % 39 74 802
40 % 40 78 797
30 % 40 78 795
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 617
95 % 39 68 759 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 68 786
70 % 39 68 838
50 % 39 202 205
40 % 54 614 23
30 % 54 614 39
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 545
95 % 39 74 687 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 709
70 % 39 74 754
50 % 39 74 810
40 % 39 199 227
30 % 39 199 244
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 20 2976
95 % 36 47 1211 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 36 47 1232
70 % 39 68 839
50 % 39 201 207
40 % 39 201 224
30 % 39 201 241
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 538
95 % 39 74 675 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 39 74 699
70 % 39 74 745
50 % 39 76 783
40 % 39 76 816
30 % 39 79 780
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 632
95 % 39 68 778 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 805
70 % 39 68 858
50 % 39 70 862
40 % 39 70 892
30 % 39 70 880
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1006
95 % 39 68 780 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 807
70 % 39 68 859
50 % 39 68 907
40 % 39 72 858
30 % 39 72 863
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 618
95 % 39 68 760 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 787
70 % 39 68 840
50 % 39 70 871
40 % 39 70 901
30 % 39 71 874
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 644
95 % 39 68 769 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 796
70 % 39 68 848
50 % 39 68 896
40 % 39 68 920
30 % 39 199 245
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 549
95 % 39 74 688 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 39 74 712
70 % 39 74 759
50 % 39 77 769
40 % 53 475 45
30 % 53 475 64
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 647
95 % 39 74 686 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 39 74 708
70 % 39 74 753
50 % 39 74 809
40 % 39 207 217
30 % 39 207 235
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 542
95 % 39 74 681 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 703
70 % 39 74 749
50 % 39 208 198
40 % 39 209 216
30 % 39 209 234
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 70 590
95 % 37 70 732 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 37 70 760
70 % 37 70 805
50 % 37 70 863
40 % 37 70 886
30 % 37 70 882
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 543
95 % 39 74 682 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 704
70 % 39 74 750
50 % 39 74 805
40 % 53 435 52
30 % 53 461 67
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 626
95 % 39 68 770 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 797
70 % 39 68 849
50 % 39 68 897
40 % 39 70 891
30 % 39 71 873
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 625
95 % 39 68 767 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 794
70 % 39 68 846
50 % 39 68 893
40 % 39 68 918
30 % 39 70 884
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 63 699
95 % 36 63 861 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 63 892
70 % 36 63 927
50 % 36 63 973
40 % 36 63 996
30 % 36 63 982
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 17 3736
95 % 11 17 4098 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 11 17 4148
70 % 11 17 4070
50 % 11 17 3951
40 % 11 17 3757
30 % 11 17 3430
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 633
95 % 39 68 761 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 788
70 % 39 68 841
50 % 39 69 873
40 % 39 69 904
30 % 39 69 891
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 646
95 % 39 68 772 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 799
70 % 39 68 852
50 % 39 194 210
40 % 39 194 232
30 % 39 194 247
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 615
95 % 39 68 757 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 784
70 % 39 68 836
50 % 39 68 889
40 % 39 189 240
30 % 39 189 254
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 23 2562
95 % 39 74 674 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 74 698
70 % 39 74 744
50 % 39 74 800
40 % 39 76 815
30 % 40 78 793
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 544
95 % 39 74 684 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 39 74 707
70 % 39 74 752
50 % 39 74 808
40 % 40 201 223
30 % 40 201 240
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 630
95 % 39 68 776 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 802
70 % 39 68 834
50 % 39 68 902
40 % 39 199 228
30 % 54 603 40
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 991
95 % 36 47 1204 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 39 68 783
70 % 39 68 835
50 % 56 107 400
40 % 63 130 314
30 % 77 276 155
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 64 675
95 % 37 64 827 Flexibility: No
Max RMSD: 3.2, Avg RMSD: 0.4
PDBFlex
90 % 37 64 860
70 % 37 64 904
50 % 37 64 953
40 % 37 64 972
30 % 37 64 958
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1000
95 % 36 47 1207 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 47 1229
70 % 36 47 1256
50 % 39 74 803
40 % 39 79 774
30 % 39 79 786
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 42 1142
95 % 33 42 1359 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 33 42 1384
70 % 33 42 1408
50 % 34 46 1273
40 % 34 46 1265
30 % 34 89 666

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1XBI 1 A 50S ribosomal protein L7Ae 2190
2 2FC3 1 A 50S ribosomal protein L7Ae 56636
3 4NUT 1 A 13 kDa ribonucleoprotein-associated protein 4932
4 3PAF 1 A, B 50S ribosomal protein L7Ae 2190
5 1RA4 1 A 50S ribosomal protein L7Ae 2190
6 1SDS 2 A, B, C 50S ribosomal protein L7Ae 2190
7 1ZWZ 1 A, B Snu13p 4932
8 2ALE 1 A NHP2/L7aE family protein YEL026W 4932
9 2AIF 1 A ribosomal protein L7A 5807
10 2CZW 1 A 50S ribosomal protein L7Ae 53953
11 3O85 1 A, B Ribosomal protein L7Ae 5741
12 1PXW 1 A, B LSU ribosomal protein L7AE 29292
13 5XTM 1 A, C 50S ribosomal protein L7Ae 53953
14 3HAX 3 D 50S ribosomal protein L7Ae 2261
15 4V9F 8 F 50S ribosomal protein L7Ae 2238
16 4BW0 2 B 50S RIBOSOMAL PROTEIN L7AE K-TURN BINDING DOMAIN, RESIDUES 2-119 2234
17 1VQO 9 F 50S ribosomal protein L7AE 2238
18 1VQ8 9 F 50S ribosomal protein L7AE 2238
19 3LWR 3 C 50S ribosomal protein L7Ae 2261
20 1S72 8 F 50S ribosomal protein L7Ae 2238
21 1JJ2 8 F RIBOSOMAL PROTEIN L7AE 2238
22 1YHQ 8 F 50S ribosomal protein L7AE 2238
23 1VQP 9 F 50S ribosomal protein L7AE 2238
24 1VQM 9 F 50S ribosomal protein L7AE 2238
25 3CC2 6 F 50S ribosomal protein L7Ae 2238
26 1VQL 9 F 50S ribosomal protein L7AE 2238
27 1VQK 9 F 50S ribosomal protein L7AE 2238
28 3HJW 3 C 50S ribosomal protein L7Ae 2261
29 1VQN 10 F 50S ribosomal protein L7AE 2238
30 1YIJ 8 F 50S ribosomal protein L7AE 2238
31 1YI2 8 F 50S ribosomal protein L7AE 2238
32 3LWV 3 C 50S ribosomal protein L7Ae 2261
33 1VQ9 9 F 50S ribosomal protein L7AE 2238
34 2HVY 5 D 50S ribosomal protein L7Ae 2261
35 3LWP 3 C 50S ribosomal protein L7Ae 2261
36 1VQ7 9 F 50S ribosomal protein L7AE 2238
37 3CCM 6 F 50S ribosomal protein L7Ae 2238
38 1VQ5 9 F 50S ribosomal protein L7AE 2238
39 3CC7 6 F 50S ribosomal protein L7Ae 2238
40 1YIT 12 F 50S RIBOSOMAL PROTEIN L7AE 2238
41 3CCE 6 F 50S ribosomal protein L7Ae 2238
42 3SIU 1 A, D NHP2-like protein 1 9606
43 3G6E 7 F 50S ribosomal protein L7Ae 2238
44 3CPW 8 F 50S ribosomal protein L7Ae 2238
45 3CCU 6 F 50S ribosomal protein L7Ae 2238
46 1VQ6 10 F 50S ribosomal protein L7AE 2238
47 2OZB 2 A, D U4/U6.U5 tri-snRNP 15.5 kDa protein 9606
48 1M90 9 H RIBOSOMAL PROTEIN L7AE 2238
49 3CCL 6 F 50S ribosomal protein L7Ae 2238
50 1YJW 12 F 50S RIBOSOMAL PROTEIN L7AE 2238
51 1YJ9 8 F 50S ribosomal protein L7AE 2238
52 3CD6 6 F 50S ribosomal protein L7Ae 2238
53 3CCV 6 F 50S ribosomal protein L7Ae 2238
54 4C4W 2 C, G 50S RIBOSOMAL PROTEIN L7AE 2234
55 3CC4 6 F 50S ribosomal protein L7Ae 2238
56 2OTL 8 F 50S ribosomal protein L7Ae 2238
57 3G71 7 F 50S ribosomal protein L7Ae 2238
58 1FFK 7 E RIBOSOMAL PROTEIN L7AE 2238
59 1VQ4 9 F 50S ribosomal protein L7AE 2238
60 1YJN 8 F 50S ribosomal protein L7AE 2238
61 3CMA 6 F 50S ribosomal protein L7Ae 2238
62 3LWO 3 C 50S ribosomal protein L7Ae 2261
63 3CCS 6 F 50S ribosomal protein L7Ae 2238
64 3LWQ 3 C 50S ribosomal protein L7Ae 2261
65 3NVI 2 B, D 50S ribosomal protein L7Ae 2261
66 3CCQ 6 F 50S ribosomal protein L7Ae 2238
67 3I56 6 F 50S ribosomal protein L7Ae 2238
68 3CCR 6 F 50S ribosomal protein L7Ae 2238
69 2OTJ 8 F 50S ribosomal protein L7Ae 2238
70 1KQS 10 F RIBOSOMAL PROTEIN L7AE 2238
71 3OW2 8 F 50S ribosomal protein L7Ae 2238
72 3CXC 9 F RIBOSOMAL PROTEIN L7AE 2238
73 5G4U 2 C, D, G, H, K, L 50S RIBOSOMAL PROTEIN L7AE K-TURN BINDING DOMAIN, RESIDUES 2-119 2234
74 1QVG 9 F 50S ribosomal protein L7Ae 2238
75 3NMU 2 C, G 50S ribosomal protein L7Ae 2261
76 3CME 6 F 50S ribosomal protein L7Ae 2238
77 2QEX 8 F 50S ribosomal protein L7Ae 2238
78 5GIP 2 C, D, M, N 50S ribosomal protein L7Ae UNP residues 3-127 2287
79 5FJ4 2 C, G 50S RIBOSOMAL PROTEIN L7AE RNA BINDING DOMAIN, UNP RESIDUES 5-119 2234
80 1KC8 8 H RIBOSOMAL PROTEIN L7AE 2238
81 1RLG 2 A, B 50S ribosomal protein L7Ae 2234
82 5G4V 2 C, D, G, H 50S RIBOSOMAL PROTEIN L7AE K-TURN BINDING DOMAIN, RESIDUES 2-119 2234
83 1N8R 8 H 50S ribosomal protein L7Ae 2238
84 1Q81 9 H 50S ribosomal protein L7Ae 2238
85 1E7K 1 A, B 15.5 KD RNA BINDING PROTEIN 9606
86 1Q82 9 H 50S ribosomal protein L7Ae 2238
87 1QVF 9 F 50S ribosomal protein L7Ae 2238
88 1NJI 8 H 50S ribosomal protein L7Ae 2238
89 1K73 8 H RIBOSOMAL PROTEIN L7AE 2238
90 1K9M 8 H RIBOSOMAL PROTEIN L7AE 2238
91 1KD1 8 H RIBOSOMAL PROTEIN L7AE 2238
92 3I55 7 F 50S ribosomal protein L7Ae 2238
93 1K8A 8 H RIBOSOMAL PROTEIN L7AE 2238
94 3SIV 1 A, D, G, J NHP2-like protein 1 9606
95 1Q86 9 H 50S ribosomal protein L7Ae 2238
96 1M1K 8 H RIBOSOMAL PROTEIN L7AE 2238
97 3G4S 7 F 50S ribosomal protein L7Ae 2238
98 5Y7M 1 A, C 50S ribosomal protein L7Ae 53953
99 3CCJ 6 F 50S ribosomal protein L7Ae 2238
100 1W2B 11 F 50S RIBOSOMAL PROTEIN L7AE 2238
101 2QA4 8 F 50S ribosomal protein L7Ae 2238
102 1Q7Y 9 H 50S ribosomal protein L7Ae 2238
103 3NVK 2 E, H 50S ribosomal protein L7Ae 2261
104 3PLA 2 C, D, L 50S ribosomal protein L7Ae 2287
105 5GIN 2 C, D, L 50S ribosomal protein L7Ae 2287
106 5DCV 1 A, C 50S ribosomal protein L7Ae 53953
107 5GIO 2 C, D, L 50S ribosomal protein L7Ae UNP residues 3-127 2287
108 3ID5 3 C, G 50S ribosomal protein L7Ae 2287
109 3HAY 4 D 50S ribosomal protein L7Ae 2261
110 5ZWM 7 M 13 kDa ribonucleoprotein-associated protein 4932
111 5ZWO 7 M 13 kDa ribonucleoprotein-associated protein 4932
112 5OQL 21 V, W Snu13 209285
113 5WLC 48 SE, SF Snu13 4932
114 5O9Z 15 O NHP2-like protein 1 9606
115 5NRL 18 K 13 kDa ribonucleoprotein-associated protein 13 kDa ribonucleoprotein-associated protein 4932
116 5WYJ 6 3G, 3H 13 kDa ribonucleoprotein-associated protein 4932
117 5WYK 6 3G, 3H 13 kDa ribonucleoprotein-associated protein 4932
118 5TZS 38 e, f Snu13 4932
119 5JPQ 9 U, V Snu13 209285
120 5JB3 18 3 50S ribosomal protein L7Ae 50S ribosomal protein L7AE model from Pyrococcus furiosus (PDB code 4V6U) used for fitting 29292
121 5JBH 3 3 50S ribosomal protein uL30 50S ribosomal protein L7AE model from Pyrococcus furiosus (PDB code 4V6U) used for fitting 29292
122 3JCR 25 I hSnu13 9606
123 3JCM 7 M 13 kDa ribonucleoprotein-associated protein 4932
124 5GAN 20 K 13 kDa ribonucleoprotein-associated protein 4932
125 5GAP 11 K 13 kDa ribonucleoprotein-associated protein 4932
126 4BY9 3 D, G, J, M 50S RIBOSOMAL PROTEIN L7AE RESIDUES 3-123 2261
127 4V4N 12 AG, B3 30S ribosomal protein L7AE SEE REMARK 999 2190
128 4V6U 20 A3, B4, BG 50S ribosomal protein L7Ae 2261
129 4ADX 16 F RPL7AE 145262
130 2JNB 1 A NHP2-like protein 1 9606