Sequence Similarity Clusters for the Entities in PDB 3CCS

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 43 1115
95 % 39 68 782 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 809
70 % 39 68 856
50 % 39 192 214
40 % 39 192 235
30 % 39 192 253
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 543
95 % 39 74 681 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 698
70 % 39 74 741
50 % 39 74 805
40 % 40 78 798
30 % 40 78 802
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 623
95 % 39 68 764 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 68 791
70 % 39 68 839
50 % 39 202 206
40 % 54 621 23
30 % 54 621 38
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 547
95 % 39 74 690 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 713
70 % 39 74 756
50 % 39 74 812
40 % 39 199 229
30 % 39 199 248
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 20 2990
95 % 36 47 1219 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 36 47 1242
70 % 39 68 840
50 % 39 201 209
40 % 39 201 227
30 % 39 201 245
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 540
95 % 39 74 677 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 39 74 702
70 % 39 74 746
50 % 39 76 783
40 % 39 76 816
30 % 39 79 789
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 637
95 % 39 68 783 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 811
70 % 39 68 858
50 % 39 70 862
40 % 39 70 893
30 % 39 70 882
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1014
95 % 39 68 787 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 815
70 % 39 68 861
50 % 39 68 907
40 % 39 72 860
30 % 39 72 868
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 624
95 % 39 68 765 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 792
70 % 39 68 841
50 % 39 70 871
40 % 39 70 902
30 % 39 71 876
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 650
95 % 39 68 774 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 800
70 % 39 68 848
50 % 39 68 895
40 % 39 68 919
30 % 39 199 247
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 551
95 % 39 74 692 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 39 74 717
70 % 39 74 762
50 % 39 77 770
40 % 53 482 42
30 % 53 482 59
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 653
95 % 39 74 688 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 39 74 711
70 % 39 74 754
50 % 39 74 811
40 % 39 207 219
30 % 39 207 238
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 544
95 % 39 74 683 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 706
70 % 39 74 750
50 % 39 208 201
40 % 39 209 218
30 % 39 209 237
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 70 594
95 % 37 70 737 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 37 70 765
70 % 37 70 806
50 % 37 70 863
40 % 37 70 887
30 % 37 70 884
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 545
95 % 39 74 684 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 707
70 % 39 74 751
50 % 39 74 807
40 % 53 438 52
30 % 53 464 65
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 631
95 % 39 68 775 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 801
70 % 39 68 849
50 % 39 68 896
40 % 39 70 892
30 % 39 71 875
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 625
95 % 39 68 784 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 812
70 % 39 68 859
50 % 39 68 904
40 % 39 68 926
30 % 39 70 888
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 63 703
95 % 36 63 866 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 63 895
70 % 36 63 929
50 % 36 63 978
40 % 36 63 1001
30 % 36 63 987
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 17 3757
95 % 11 17 4120 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 11 17 4168
70 % 11 17 4088
50 % 11 17 3968
40 % 11 17 3773
30 % 11 17 3442
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 638
95 % 39 68 766 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 793
70 % 39 68 842
50 % 39 69 873
40 % 39 69 904
30 % 39 69 893
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 651
95 % 39 68 777 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 804
70 % 39 68 852
50 % 39 194 212
40 % 39 194 233
30 % 39 194 250
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 621
95 % 39 68 762 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 789
70 % 39 68 837
50 % 39 68 889
40 % 39 189 242
30 % 39 189 259
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 23 2574
95 % 39 74 676 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 74 701
70 % 39 74 745
50 % 39 74 802
40 % 39 76 815
30 % 40 78 800
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 546
95 % 39 74 686 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 39 74 710
70 % 39 74 753
50 % 39 74 810
40 % 40 201 225
30 % 40 201 243
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 635
95 % 39 68 781 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 808
70 % 39 68 835
50 % 39 68 901
40 % 39 199 230
30 % 54 610 39
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 999
95 % 36 47 1211 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 39 68 788
70 % 39 68 836
50 % 56 107 406
40 % 63 130 317
30 % 77 276 160
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 64 680
95 % 37 64 833 Flexibility: No
Max RMSD: 3.2, Avg RMSD: 0.4
PDBFlex
90 % 37 64 865
70 % 37 64 905
50 % 37 64 957
40 % 37 64 977
30 % 37 64 965
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1008
95 % 36 47 1215 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 47 1239
70 % 36 47 1261
50 % 39 74 803
40 % 39 79 776
30 % 39 79 788
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 42 1149
95 % 33 42 1363 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 33 42 1391
70 % 33 42 1414
50 % 34 46 1280
40 % 34 46 1272
30 % 34 89 667

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 6 D 50S ribosomal protein L5P 2238
2 1VQO 7 D 50S ribosomal protein L5P 2238
3 1VQ8 7 D 50S ribosomal protein L5P 2238
4 1S72 6 D 50S ribosomal protein L5P 2238
5 1JJ2 6 D RIBOSOMAL PROTEIN L5 2238
6 1YHQ 6 D 50S ribosomal protein L5P 2238
7 1VQP 7 D 50S ribosomal protein L5P 2238
8 1VQM 7 D 50S ribosomal protein L5P 2238
9 3CC2 4 D 50S ribosomal protein L5P 2238
10 1VQL 7 D 50S ribosomal protein L5P 2238
11 1VQK 7 D 50S ribosomal protein L5P 2238
12 1VQN 8 D 50S ribosomal protein L5P 2238
13 1YIJ 6 D 50S ribosomal protein L5P 2238
14 1YI2 6 D 50S ribosomal protein L5P 2238
15 1VQ9 7 D 50S ribosomal protein L5P 2238
16 1VQ7 7 D 50S ribosomal protein L5P 2238
17 3CCM 4 D 50S ribosomal protein L5P 2238
18 1VQ5 7 D 50S ribosomal protein L5P 2238
19 3CC7 4 D 50S ribosomal protein L5P 2238
20 1YIT 10 D 50S RIBOSOMAL PROTEIN L5P 2238
21 3CCE 4 D 50S ribosomal protein L5P 2238
22 3G6E 5 D 50S ribosomal protein L5P 2238
23 3CPW 6 D 50S ribosomal protein L5P 2238
24 3CCU 4 D 50S ribosomal protein L5P 2238
25 1VQ6 8 D 50S ribosomal protein L5P 2238
26 1M90 7 F RIBOSOMAL PROTEIN L5 2238
27 3CCL 4 D 50S ribosomal protein L5P 2238
28 1YJW 10 D 50S RIBOSOMAL PROTEIN L5P 2238
29 1YJ9 6 D 50S ribosomal protein L5P 2238
30 3CD6 4 D 50S ribosomal protein L5P 2238
31 3CCV 4 D 50S ribosomal protein L5P 2238
32 3CC4 4 D 50S ribosomal protein L5P 2238
33 2OTL 6 D 50S ribosomal protein L5P 2238
34 3G71 5 D 50S ribosomal protein L5P 2238
35 1FFK 6 D RIBOSOMAL PROTEIN L5 2238
36 1VQ4 7 D 50S ribosomal protein L5P 2238
37 1YJN 6 D 50S ribosomal protein L5P 2238
38 3CMA 4 D 50S ribosomal protein L5P 2238
39 3CCS 4 D 50S ribosomal protein L5P 2238
40 3CCQ 4 D 50S ribosomal protein L5P 2238
41 3I56 4 D 50S ribosomal protein L5P 2238
42 3CCR 4 D 50S ribosomal protein L5P 2238
43 2OTJ 6 D 50S ribosomal protein L5P 2238
44 1KQS 8 D RIBOSOMAL PROTEIN L5 2238
45 3OW2 6 D 50S ribosomal protein L5P 2238
46 3CXC 7 D RIBOSOMAL PROTEIN L5 2238
47 1QVG 7 D 50S ribosomal protein L5P 2238
48 3CME 4 D 50S ribosomal protein L5P 2238
49 2QEX 6 D 50S ribosomal protein L5P 2238
50 1KC8 6 F RIBOSOMAL PROTEIN L5 2238
51 1N8R 6 F 50S ribosomal protein L5P 2238
52 1Q81 7 F 50S ribosomal protein L5P 2238
53 1Q82 7 F 50S ribosomal protein L5P 2238
54 1QVF 7 D 50S ribosomal protein L5P 2238
55 1NJI 6 F 50S ribosomal protein L5P 2238
56 1K73 6 F RIBOSOMAL PROTEIN L5 2238
57 1K9M 6 F RIBOSOMAL PROTEIN L5 2238
58 1KD1 6 F RIBOSOMAL PROTEIN L5 2238
59 3I55 5 D 50S ribosomal protein L5P 2238
60 1K8A 6 F RIBOSOMAL PROTEIN L5 2238
61 1Q86 7 F 50S ribosomal protein L5P 2238
62 1M1K 6 F RIBOSOMAL PROTEIN L5 2238
63 3G4S 5 D 50S ribosomal protein L5P 2238
64 3CCJ 4 D 50S ribosomal protein L5P 2238
65 1W2B 9 D 50S RIBOSOMAL PROTEIN L5P HMAL5, HL13, RIBOSOMAL PROTEIN L5 2238
66 2QA4 6 D 50S ribosomal protein L5P 2238
67 1Q7Y 7 F 50S ribosomal protein L5P 2238
68 4V4P 7 AG 50S ribosomal protein L5 274
69 4V4R 31 BG 50S ribosomal protein L5 274
70 4V4S 31 BG 50S ribosomal protein L5 274
71 4V4T 30 BG 50S ribosomal protein L5 274
72 4ADX 14 D RPL5 145262
73 1ML5 31 g 50S RIBOSOMAL PROTEIN L5 562
74 4V42 31 BG 50S RIBOSOMAL PROTEIN L5 274