Sequence Similarity Clusters for the Entities in PDB 3CCS

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 43 1093
95 % 39 68 767 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 794
70 % 39 68 847
50 % 39 192 212
40 % 39 192 234
30 % 39 192 248
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 540
95 % 39 74 671 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 687
70 % 39 74 733
50 % 39 74 794
40 % 40 78 791
30 % 40 78 791
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 615
95 % 39 68 751 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 68 779
70 % 39 68 830
50 % 39 202 204
40 % 54 609 22
30 % 54 609 38
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 545
95 % 39 74 680 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 702
70 % 39 74 749
50 % 39 74 802
40 % 39 199 226
30 % 39 199 242
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 20 2941
95 % 36 47 1204 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 36 47 1226
70 % 39 68 831
50 % 39 201 206
40 % 39 201 224
30 % 39 201 240
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 537
95 % 39 74 666 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 39 74 690
70 % 39 74 737
50 % 39 76 775
40 % 39 76 807
30 % 39 79 778
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 627
95 % 39 68 768 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 796
70 % 39 68 849
50 % 39 70 854
40 % 39 70 885
30 % 39 70 874
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 997
95 % 39 68 771 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 799
70 % 39 68 850
50 % 39 68 897
40 % 39 72 851
30 % 39 72 857
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 616
95 % 39 68 752 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 780
70 % 39 68 832
50 % 39 70 864
40 % 39 70 895
30 % 39 71 869
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 639
95 % 39 68 759 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 787
70 % 39 68 839
50 % 39 68 887
40 % 39 68 911
30 % 39 199 243
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 549
95 % 39 74 681 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 39 74 705
70 % 39 74 754
50 % 39 77 763
40 % 53 470 45
30 % 53 470 62
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 642
95 % 39 74 678 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 39 74 700
70 % 39 74 747
50 % 39 74 801
40 % 39 207 216
30 % 39 207 234
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 541
95 % 39 74 673 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 695
70 % 39 74 743
50 % 39 208 197
40 % 39 209 215
30 % 39 209 233
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 70 588
95 % 37 70 728 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 37 70 756
70 % 37 70 799
50 % 37 70 855
40 % 37 70 878
30 % 37 70 876
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 542
95 % 39 74 674 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 696
70 % 39 74 744
50 % 39 74 798
40 % 53 430 52
30 % 53 456 67
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 621
95 % 39 68 760 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 788
70 % 39 68 840
50 % 39 68 888
40 % 39 70 883
30 % 39 71 868
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 620
95 % 39 68 758 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 786
70 % 39 68 838
50 % 39 68 884
40 % 39 68 909
30 % 39 70 878
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 63 689
95 % 36 63 850 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 63 882
70 % 36 63 917
50 % 36 63 963
40 % 36 63 983
30 % 36 63 970
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 17 3690
95 % 11 17 4046 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 11 17 4097
70 % 11 17 4020
50 % 11 17 3908
40 % 11 17 3717
30 % 11 17 3406
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 628
95 % 39 68 753 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 781
70 % 39 68 833
50 % 39 69 866
40 % 39 69 897
30 % 39 69 885
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 641
95 % 39 68 762 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 790
70 % 39 68 843
50 % 39 194 210
40 % 39 194 231
30 % 39 194 246
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 614
95 % 39 68 750 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 778
70 % 39 68 829
50 % 39 68 880
40 % 39 189 238
30 % 39 189 254
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 23 2561
95 % 39 74 670 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 74 693
70 % 39 74 739
50 % 39 74 793
40 % 39 76 809
30 % 40 78 790
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 543
95 % 39 74 676 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 39 74 699
70 % 39 74 746
50 % 39 74 800
40 % 40 201 223
30 % 40 201 238
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 625
95 % 39 68 766 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 793
70 % 39 68 826
50 % 39 68 893
40 % 39 199 227
30 % 54 598 40
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 982
95 % 36 47 1196 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 39 68 776
70 % 39 68 827
50 % 56 107 401
40 % 63 128 321
30 % 77 274 155
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 64 668
95 % 37 64 818 Flexibility: No
Max RMSD: 3.2, Avg RMSD: 0.4
PDBFlex
90 % 37 64 851
70 % 37 64 894
50 % 37 64 942
40 % 37 64 959
30 % 37 64 948
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 991
95 % 36 47 1199 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 47 1222
70 % 36 47 1247
50 % 39 74 795
40 % 39 79 769
30 % 39 79 783
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 42 1129
95 % 33 42 1350 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 33 42 1373
70 % 33 42 1392
50 % 34 46 1262
40 % 34 46 1256
30 % 34 89 662

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 6 D 50S ribosomal protein L5P 2238
2 1VQO 7 D 50S ribosomal protein L5P 2238
3 1VQ8 7 D 50S ribosomal protein L5P 2238
4 1S72 6 D 50S ribosomal protein L5P 2238
5 1JJ2 6 D RIBOSOMAL PROTEIN L5 2238
6 1YHQ 6 D 50S ribosomal protein L5P 2238
7 1VQP 7 D 50S ribosomal protein L5P 2238
8 1VQM 7 D 50S ribosomal protein L5P 2238
9 3CC2 4 D 50S ribosomal protein L5P 2238
10 1VQL 7 D 50S ribosomal protein L5P 2238
11 1VQK 7 D 50S ribosomal protein L5P 2238
12 1VQN 8 D 50S ribosomal protein L5P 2238
13 1YIJ 6 D 50S ribosomal protein L5P 2238
14 1YI2 6 D 50S ribosomal protein L5P 2238
15 1VQ9 7 D 50S ribosomal protein L5P 2238
16 1VQ7 7 D 50S ribosomal protein L5P 2238
17 3CCM 4 D 50S ribosomal protein L5P 2238
18 1VQ5 7 D 50S ribosomal protein L5P 2238
19 3CC7 4 D 50S ribosomal protein L5P 2238
20 1YIT 10 D 50S RIBOSOMAL PROTEIN L5P 2238
21 3CCE 4 D 50S ribosomal protein L5P 2238
22 3G6E 5 D 50S ribosomal protein L5P 2238
23 3CPW 6 D 50S ribosomal protein L5P 2238
24 3CCU 4 D 50S ribosomal protein L5P 2238
25 1VQ6 8 D 50S ribosomal protein L5P 2238
26 1M90 7 F RIBOSOMAL PROTEIN L5 2238
27 3CCL 4 D 50S ribosomal protein L5P 2238
28 1YJW 10 D 50S RIBOSOMAL PROTEIN L5P 2238
29 1YJ9 6 D 50S ribosomal protein L5P 2238
30 3CD6 4 D 50S ribosomal protein L5P 2238
31 3CCV 4 D 50S ribosomal protein L5P 2238
32 3CC4 4 D 50S ribosomal protein L5P 2238
33 2OTL 6 D 50S ribosomal protein L5P 2238
34 3G71 5 D 50S ribosomal protein L5P 2238
35 1FFK 6 D RIBOSOMAL PROTEIN L5 2238
36 1VQ4 7 D 50S ribosomal protein L5P 2238
37 1YJN 6 D 50S ribosomal protein L5P 2238
38 3CMA 4 D 50S ribosomal protein L5P 2238
39 3CCS 4 D 50S ribosomal protein L5P 2238
40 3CCQ 4 D 50S ribosomal protein L5P 2238
41 3I56 4 D 50S ribosomal protein L5P 2238
42 3CCR 4 D 50S ribosomal protein L5P 2238
43 2OTJ 6 D 50S ribosomal protein L5P 2238
44 1KQS 8 D RIBOSOMAL PROTEIN L5 2238
45 3OW2 6 D 50S ribosomal protein L5P 2238
46 3CXC 7 D RIBOSOMAL PROTEIN L5 2238
47 1QVG 7 D 50S ribosomal protein L5P 2238
48 3CME 4 D 50S ribosomal protein L5P 2238
49 2QEX 6 D 50S ribosomal protein L5P 2238
50 1KC8 6 F RIBOSOMAL PROTEIN L5 2238
51 1N8R 6 F 50S ribosomal protein L5P 2238
52 1Q81 7 F 50S ribosomal protein L5P 2238
53 1Q82 7 F 50S ribosomal protein L5P 2238
54 1QVF 7 D 50S ribosomal protein L5P 2238
55 1NJI 6 F 50S ribosomal protein L5P 2238
56 1K73 6 F RIBOSOMAL PROTEIN L5 2238
57 1K9M 6 F RIBOSOMAL PROTEIN L5 2238
58 1KD1 6 F RIBOSOMAL PROTEIN L5 2238
59 3I55 5 D 50S ribosomal protein L5P 2238
60 1K8A 6 F RIBOSOMAL PROTEIN L5 2238
61 1Q86 7 F 50S ribosomal protein L5P 2238
62 1M1K 6 F RIBOSOMAL PROTEIN L5 2238
63 3G4S 5 D 50S ribosomal protein L5P 2238
64 3CCJ 4 D 50S ribosomal protein L5P 2238
65 1W2B 9 D 50S RIBOSOMAL PROTEIN L5P HMAL5, HL13, RIBOSOMAL PROTEIN L5 2238
66 2QA4 6 D 50S ribosomal protein L5P 2238
67 1Q7Y 7 F 50S ribosomal protein L5P 2238
68 4V4P 7 AG 50S ribosomal protein L5 274
69 4V4R 31 BG 50S ribosomal protein L5 274
70 4V4S 31 BG 50S ribosomal protein L5 274
71 4V4T 30 BG 50S ribosomal protein L5 274
72 4ADX 14 D RPL5 145262
73 1ML5 31 g 50S RIBOSOMAL PROTEIN L5 562
74 4V42 31 BG 50S RIBOSOMAL PROTEIN L5 274