Sequence Similarity Clusters for the Entities in PDB 3CCS

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 43 1127
95 % 39 68 784 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 812
70 % 39 68 859
50 % 39 196 211
40 % 39 196 235
30 % 39 196 249
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 549
95 % 39 74 684 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 701
70 % 39 74 747
50 % 39 74 809
40 % 40 78 803
30 % 40 78 802
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 626
95 % 39 68 766 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 68 793
70 % 39 68 841
50 % 39 206 203
40 % 54 628 23
30 % 54 628 38
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 553
95 % 39 74 693 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 716
70 % 39 74 761
50 % 39 74 818
40 % 39 203 226
30 % 39 203 244
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 20 3016
95 % 36 47 1231 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 36 47 1254
70 % 39 68 842
50 % 39 205 206
40 % 39 205 224
30 % 39 205 241
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 546
95 % 39 74 680 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 39 74 705
70 % 39 74 751
50 % 39 76 787
40 % 39 76 820
30 % 39 79 789
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 641
95 % 39 68 785 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 813
70 % 39 68 861
50 % 39 70 864
40 % 39 70 891
30 % 39 70 883
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1026
95 % 39 68 789 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 817
70 % 39 68 864
50 % 39 68 912
40 % 39 72 863
30 % 39 72 869
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 627
95 % 39 68 767 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 794
70 % 39 68 843
50 % 39 70 876
40 % 39 70 908
30 % 39 71 878
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 654
95 % 39 68 775 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 803
70 % 39 68 850
50 % 39 68 901
40 % 39 68 928
30 % 39 203 243
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 557
95 % 39 74 694 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 39 74 719
70 % 39 74 766
50 % 39 77 774
40 % 53 485 42
30 % 53 485 61
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 657
95 % 39 74 691 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 39 74 714
70 % 39 74 759
50 % 39 74 817
40 % 39 211 218
30 % 39 211 236
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 550
95 % 39 74 686 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 709
70 % 39 74 755
50 % 39 212 200
40 % 39 213 217
30 % 39 213 235
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 70 599
95 % 37 70 738 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 37 70 768
70 % 37 70 809
50 % 37 70 865
40 % 37 70 892
30 % 37 70 885
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 551
95 % 39 74 687 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 710
70 % 39 74 756
50 % 39 74 811
40 % 53 441 52
30 % 53 467 66
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 634
95 % 39 68 776 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 804
70 % 39 68 851
50 % 39 68 902
40 % 39 70 897
30 % 39 71 877
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 628
95 % 39 68 786 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 814
70 % 39 68 862
50 % 39 68 909
40 % 39 68 935
30 % 39 70 892
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 63 712
95 % 36 63 871 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 63 897
70 % 36 63 935
50 % 36 63 983
40 % 36 63 1007
30 % 36 63 993
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 17 3790
95 % 11 17 4149 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 11 17 4199
70 % 11 17 4120
50 % 11 17 3996
40 % 11 17 3791
30 % 11 17 3456
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 642
95 % 39 68 768 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 795
70 % 39 68 844
50 % 39 69 878
40 % 39 69 911
30 % 39 69 897
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 655
95 % 39 68 779 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 807
70 % 39 68 855
50 % 39 198 210
40 % 39 198 232
30 % 39 198 248
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 625
95 % 39 68 765 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 792
70 % 39 68 840
50 % 39 68 895
40 % 39 193 239
30 % 39 193 253
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 23 2591
95 % 39 74 679 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 74 704
70 % 39 74 750
50 % 39 74 805
40 % 39 76 819
30 % 40 78 800
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 552
95 % 39 74 689 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 39 74 713
70 % 39 74 758
50 % 39 74 816
40 % 40 205 220
30 % 40 205 240
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 639
95 % 39 68 783 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 811
70 % 39 68 838
50 % 39 68 907
40 % 39 203 227
30 % 54 617 40
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1011
95 % 36 47 1224 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 39 68 791
70 % 39 68 839
50 % 56 108 400
40 % 63 131 314
30 % 77 281 160
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 64 686
95 % 37 64 837 Flexibility: No
Max RMSD: 3.2, Avg RMSD: 0.4
PDBFlex
90 % 37 64 868
70 % 37 64 910
50 % 37 64 961
40 % 37 64 985
30 % 37 64 971
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1020
95 % 36 47 1228 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 47 1252
70 % 36 47 1269
50 % 39 74 806
40 % 39 79 780
30 % 39 79 788
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 42 1163
95 % 33 42 1376 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 33 42 1403
70 % 33 42 1427
50 % 34 46 1292
40 % 34 46 1280
30 % 34 93 639

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 5 C 50S ribosomal protein L4P 2238
2 1VQO 6 C 50S ribosomal protein L4E 2238
3 1VQ8 6 C 50S ribosomal protein L4E 2238
4 1S72 5 C 50S ribosomal protein L4E 2238
5 1JJ2 5 C RIBOSOMAL PROTEIN L4 2238
6 1YHQ 5 C 50S ribosomal protein L4E 2238
7 1VQP 6 C 50S ribosomal protein L4E 2238
8 1VQM 6 C 50S ribosomal protein L4E 2238
9 3CC2 3 C 50S ribosomal protein L4P 2238
10 1VQL 6 C 50S ribosomal protein L4E 2238
11 1VQK 6 C 50S ribosomal protein L4E 2238
12 1VQN 7 C 50S ribosomal protein L4E 2238
13 1YIJ 5 C 50S ribosomal protein L4E 2238
14 1YI2 5 C 50S ribosomal protein L4E 2238
15 1VQ9 6 C 50S ribosomal protein L4E 2238
16 1VQ7 6 C 50S ribosomal protein L4E 2238
17 3CCM 3 C 50S ribosomal protein L4P 2238
18 1VQ5 6 C 50S ribosomal protein L4E 2238
19 3CC7 3 C 50S ribosomal protein L4P 2238
20 1YIT 9 C 50S RIBOSOMAL PROTEIN L4E 2238
21 3CCE 3 C 50S ribosomal protein L4P 2238
22 3G6E 4 C 50S ribosomal protein L4P 2238
23 3CPW 5 C 50S ribosomal protein L4P 2238
24 3CCU 3 C 50S ribosomal protein L4P 2238
25 1VQ6 7 C 50S ribosomal protein L4E 2238
26 1M90 6 E RIBOSOMAL PROTEIN L4 2238
27 3CCL 3 C 50S ribosomal protein L4P 2238
28 1YJW 9 C 50S RIBOSOMAL PROTEIN L4E 2238
29 1YJ9 5 C 50S ribosomal protein L4E 2238
30 3CD6 3 C 50S ribosomal protein L4P 2238
31 3CCV 3 C 50S ribosomal protein L4P 2238
32 3CC4 3 C 50S ribosomal protein L4P 2238
33 2OTL 5 C 50S ribosomal protein L4P 2238
34 3G71 4 C 50S ribosomal protein L4P 2238
35 1FFK 5 C RIBOSOMAL PROTEIN L4 2238
36 1VQ4 6 C 50S ribosomal protein L4E 2238
37 1YJN 5 C 50S ribosomal protein L4E 2238
38 3CMA 3 C 50S ribosomal protein L4P 2238
39 3CCS 3 C 50S ribosomal protein L4P 2238
40 3CCQ 3 C 50S ribosomal protein L4P 2238
41 3I56 3 C 50S ribosomal protein L4P 2238
42 3CCR 3 C 50S ribosomal protein L4P 2238
43 2OTJ 5 C 50S ribosomal protein L4P 2238
44 1KQS 7 C RIBOSOMAL PROTEIN L4 2238
45 3OW2 5 C 50S ribosomal protein L4P 2238
46 3CXC 6 C RIBOSOMAL PROTEIN L4 2238
47 1QVG 6 C 50S ribosomal protein L4E 2238
48 3CME 3 C 50S ribosomal protein L4P 2238
49 2QEX 5 C 50S ribosomal protein L4P 2238
50 1KC8 5 E RIBOSOMAL PROTEIN L4 2238
51 1N8R 5 E 50S ribosomal protein L4E 2238
52 1Q81 6 E 50S ribosomal protein L4E 2238
53 1Q82 6 E 50S ribosomal protein L4E 2238
54 1QVF 6 C 50S ribosomal protein L4E 2238
55 1NJI 5 E 50S ribosomal protein L4E 2238
56 1K73 5 E RIBOSOMAL PROTEIN L4 2238
57 1K9M 5 E RIBOSOMAL PROTEIN L4 2238
58 1KD1 5 E RIBOSOMAL PROTEIN L4 2238
59 3I55 4 C 50S ribosomal protein L4P 2238
60 1K8A 5 E RIBOSOMAL PROTEIN L4 2238
61 1Q86 6 E 50S ribosomal protein L4E 2238
62 1M1K 5 E RIBOSOMAL PROTEIN L4 2238
63 3G4S 4 C 50S ribosomal protein L4P 2238
64 3CCJ 3 C 50S ribosomal protein L4P 2238
65 1W2B 8 C 50S RIBOSOMAL PROTEIN L4P 2238
66 2QA4 5 C 50S ribosomal protein L4P 2238
67 1Q7Y 6 E 50S ribosomal protein L4E 2238
68 4V4P 6 AF 50S ribosomal protein L4 274
69 4V4R 30 BF 50S ribosomal protein L4 274
70 4V4S 30 BF 50S ribosomal protein L4 274
71 4V4T 29 BF 50S ribosomal protein L4 274
72 4ADX 13 C RPL4 145262
73 1ML5 30 f 50S RIBOSOMAL PROTEIN L4 562
74 4V42 30 BF 50S RIBOSOMAL PROTEIN L4 274