Sequence Similarity Clusters for the Entities in PDB 3CCS

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 43 1105
95 % 39 68 775 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 802
70 % 39 68 854
50 % 39 192 213
40 % 39 192 234
30 % 39 192 249
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 541
95 % 39 74 679 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 696
70 % 39 74 740
50 % 39 74 802
40 % 40 78 797
30 % 40 78 797
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 617
95 % 39 68 758 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 68 786
70 % 39 68 837
50 % 39 202 205
40 % 54 614 23
30 % 54 614 39
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 545
95 % 39 74 687 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 710
70 % 39 74 754
50 % 39 74 810
40 % 39 199 227
30 % 39 199 244
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 20 2969
95 % 36 47 1207 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 36 47 1229
70 % 39 68 838
50 % 39 201 207
40 % 39 201 224
30 % 39 201 241
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 538
95 % 39 74 674 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 39 74 699
70 % 39 74 744
50 % 39 76 783
40 % 39 76 815
30 % 39 79 781
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 631
95 % 39 68 776 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 804
70 % 39 68 856
50 % 39 70 862
40 % 39 70 891
30 % 39 70 879
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1003
95 % 39 68 778 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 806
70 % 39 68 857
50 % 39 68 906
40 % 39 72 857
30 % 39 72 863
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 618
95 % 39 68 759 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 787
70 % 39 68 839
50 % 39 70 871
40 % 39 70 900
30 % 39 71 873
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 643
95 % 39 68 767 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 795
70 % 39 68 846
50 % 39 68 895
40 % 39 68 917
30 % 39 199 245
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 549
95 % 39 74 688 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 39 74 713
70 % 39 74 759
50 % 39 77 769
40 % 53 475 45
30 % 53 475 64
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 646
95 % 39 74 686 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 39 74 709
70 % 39 74 753
50 % 39 74 809
40 % 39 207 217
30 % 39 207 235
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 542
95 % 39 74 681 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 704
70 % 39 74 749
50 % 39 208 198
40 % 39 209 216
30 % 39 209 234
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 70 590
95 % 37 70 732 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 37 70 761
70 % 37 70 805
50 % 37 70 863
40 % 37 70 885
30 % 37 70 881
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 543
95 % 39 74 682 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 705
70 % 39 74 750
50 % 39 74 805
40 % 53 435 52
30 % 53 461 67
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 625
95 % 39 68 768 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 796
70 % 39 68 847
50 % 39 68 896
40 % 39 70 890
30 % 39 71 872
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 624
95 % 39 68 765 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 793
70 % 39 68 844
50 % 39 68 892
40 % 39 68 915
30 % 39 70 884
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 63 695
95 % 36 63 856 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 63 888
70 % 36 63 922
50 % 36 63 970
40 % 36 63 990
30 % 36 63 978
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 17 3733
95 % 11 17 4092 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 11 17 4141
70 % 11 17 4063
50 % 11 17 3942
40 % 11 17 3747
30 % 11 17 3424
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 632
95 % 39 68 760 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 788
70 % 39 68 840
50 % 39 69 873
40 % 39 69 902
30 % 39 69 891
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 645
95 % 39 68 770 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 798
70 % 39 68 850
50 % 39 194 210
40 % 39 194 231
30 % 39 194 247
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 615
95 % 39 68 756 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 784
70 % 39 68 835
50 % 39 68 888
40 % 39 189 239
30 % 39 189 254
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 23 2585
95 % 39 74 678 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 74 702
70 % 39 74 746
50 % 39 74 801
40 % 39 76 817
30 % 40 78 796
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 544
95 % 39 74 684 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 39 74 708
70 % 39 74 752
50 % 39 74 808
40 % 40 201 223
30 % 40 201 239
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 629
95 % 39 68 774 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 801
70 % 39 68 833
50 % 39 68 901
40 % 39 199 228
30 % 54 603 40
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 988
95 % 36 47 1200 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 39 68 783
70 % 39 68 834
50 % 56 107 400
40 % 63 130 314
30 % 77 276 155
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 64 672
95 % 37 64 823 Flexibility: No
Max RMSD: 3.2, Avg RMSD: 0.4
PDBFlex
90 % 37 64 857
70 % 37 64 900
50 % 37 64 951
40 % 37 64 968
30 % 37 64 956
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 997
95 % 36 47 1203 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 47 1226
70 % 36 47 1254
50 % 39 74 803
40 % 39 79 774
30 % 39 79 787
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 42 1140
95 % 33 42 1357 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 33 42 1383
70 % 33 42 1405
50 % 34 46 1271
40 % 34 46 1263
30 % 34 89 664

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 26 X 50S ribosomal protein L31e 2238
2 1VQO 26 X 50S ribosomal protein L31e 2238
3 1VQ8 26 X 50S ribosomal protein L31e 2238
4 1S72 26 X 50S ribosomal protein L31e 2238
5 1JJ2 25 W RIBOSOMAL PROTEIN L31E 2238
6 1YHQ 26 X 50S ribosomal protein L31e 2238
7 1VQP 26 X 50S ribosomal protein L31e 2238
8 1VQM 26 X 50S ribosomal protein L31e 2238
9 3CC2 24 X 50S ribosomal protein L31e 2238
10 1VQL 26 X 50S ribosomal protein L31e 2238
11 1VQK 26 X 50S ribosomal protein L31e 2238
12 1VQN 27 X 50S ribosomal protein L31e 2238
13 1YIJ 26 X 50S ribosomal protein L31e 2238
14 1YI2 26 X 50S ribosomal protein L31e 2238
15 1VQ9 26 X 50S ribosomal protein L31e 2238
16 1VQ7 26 X 50S ribosomal protein L31e 2238
17 3CCM 24 X 50S ribosomal protein L31e 2238
18 1VQ5 26 X 50S ribosomal protein L31e 2238
19 3CC7 24 X 50S ribosomal protein L31e 2238
20 1YIT 30 X 50S RIBOSOMAL PROTEIN L31E 2238
21 3CCE 24 X 50S ribosomal protein L31e 2238
22 3G6E 25 X 50S ribosomal protein L31e 2238
23 3CPW 25 W 50S ribosomal protein L31e 2238
24 3CCU 24 X 50S ribosomal protein L31e 2238
25 1VQ6 27 X 50S ribosomal protein L31e 2238
26 1M90 26 Y RIBOSOMAL PROTEIN L31E 2238
27 3CCL 24 X 50S ribosomal protein L31e 2238
28 1YJW 30 X 50S RIBOSOMAL PROTEIN L31E 2238
29 1YJ9 26 X 50S ribosomal protein L31e 2238
30 3CD6 24 X 50S ribosomal protein L31e 2238
31 3CCV 24 X 50S ribosomal protein L31e 2238
32 3CC4 24 X 50S ribosomal protein L31e 2238
33 2OTL 25 X 50S ribosomal protein L31e 2238
34 3G71 25 X 50S ribosomal protein L31e 2238
35 1FFK 23 U RIBOSOMAL PROTEIN L31E 2238
36 1VQ4 26 X 50S ribosomal protein L31e 2238
37 1YJN 26 X 50S ribosomal protein L31e 2238
38 3CMA 24 X 50S ribosomal protein L31e 2238
39 3CCS 24 X 50S ribosomal protein L31e 2238
40 3CCQ 24 X 50S ribosomal protein L31e 2238
41 3I56 24 X 50S ribosomal protein L31e 2238
42 3CCR 24 X 50S ribosomal protein L31e 2238
43 2OTJ 25 X 50S ribosomal protein L31e 2238
44 1KQS 27 W RIBOSOMAL PROTEIN L31E 2238
45 3OW2 25 W 50S ribosomal protein L31e 2238
46 3CXC 26 W RIBOSOMAL PROTEIN L31E 2238
47 1QVG 26 W 50S ribosomal protein L31e 2238
48 3CME 24 X 50S ribosomal protein L31e 2238
49 2QEX 25 X 50S ribosomal protein L31e 2238
50 1KC8 25 Y RIBOSOMAL PROTEIN L31E 2238
51 1N8R 25 Y 50S ribosomal protein L31E 2238
52 1Q81 26 Y 50S ribosomal protein L31e 2238
53 1Q82 26 Y 50S ribosomal protein L31e 2238
54 1QVF 26 W 50S ribosomal protein L31e 2238
55 1NJI 25 Y 50S ribosomal protein L31E 2238
56 1K73 25 Y RIBOSOMAL PROTEIN L31E 2238
57 1K9M 25 Y RIBOSOMAL PROTEIN L31E 2238
58 1KD1 25 Y RIBOSOMAL PROTEIN L31E 2238
59 3I55 25 X 50S ribosomal protein L31e 2238
60 1K8A 25 Y RIBOSOMAL PROTEIN L31E 2238
61 1Q86 26 Y 50S ribosomal protein L31e 2238
62 1M1K 25 Y RIBOSOMAL PROTEIN L31E 2238
63 3G4S 25 X 50S ribosomal protein L31e 2238
64 3CCJ 24 X 50S ribosomal protein L31e 2238
65 1W2B 28 W 50S RIBOSOMAL PROTEIN L31E 2238
66 2QA4 26 X 50S RIBOSOMAL PROTEIN L31E 2238
67 1Q7Y 26 Y 50S ribosomal protein L31e 2238
68 4ADX 34 X RPL31E 145262