Sequence Similarity Clusters for the Entities in PDB 3CCS

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 43 1188
95 % 39 68 807 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 838
70 % 39 68 887
50 % 39 206 210
40 % 39 206 230
30 % 39 206 247
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 583
95 % 39 74 714 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 734
70 % 39 74 778
50 % 39 74 841
40 % 40 78 829
30 % 40 78 826
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 650
95 % 39 68 794 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 68 825
70 % 39 68 871
50 % 39 216 204
40 % 54 649 24
30 % 54 649 40
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 588
95 % 39 74 723 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 750
70 % 39 74 792
50 % 39 74 850
40 % 39 213 223
30 % 39 213 242
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 20 3122
95 % 36 47 1279 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 36 47 1303
70 % 39 68 872
50 % 39 215 205
40 % 39 215 222
30 % 39 215 240
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 579
95 % 39 74 709 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 39 74 738
70 % 39 74 781
50 % 39 76 815
40 % 39 76 844
30 % 39 79 811
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 661
95 % 39 68 808 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 839
70 % 39 68 889
50 % 39 70 893
40 % 39 70 924
30 % 39 70 912
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1064
95 % 39 68 813 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 844
70 % 39 68 893
50 % 39 68 940
40 % 39 72 895
30 % 39 72 898
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 651
95 % 39 68 795 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 826
70 % 39 68 873
50 % 39 70 905
40 % 39 70 939
30 % 39 71 907
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 674
95 % 39 68 798 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 829
70 % 39 68 878
50 % 39 68 930
40 % 39 68 961
30 % 39 213 241
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 591
95 % 39 74 724 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 39 74 753
70 % 39 74 797
50 % 39 77 805
40 % 53 497 39
30 % 53 497 59
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 677
95 % 39 74 720 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 39 74 747
70 % 39 74 789
50 % 39 74 849
40 % 39 221 219
30 % 39 221 237
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 584
95 % 39 74 716 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 743
70 % 39 74 786
50 % 39 222 203
40 % 39 223 216
30 % 39 223 236
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 70 622
95 % 37 70 765 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 37 70 797
70 % 37 70 839
50 % 37 70 895
40 % 37 70 925
30 % 37 70 913
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 585
95 % 39 74 717 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 744
70 % 39 74 787
50 % 39 74 844
40 % 53 452 58
30 % 53 478 70
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 655
95 % 39 68 799 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 830
70 % 39 68 879
50 % 39 68 931
40 % 39 70 929
30 % 39 71 906
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 652
95 % 39 68 809 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 840
70 % 39 68 890
50 % 39 68 938
40 % 39 68 968
30 % 39 70 921
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 63 730
95 % 36 63 900 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 63 929
70 % 36 63 970
50 % 36 63 1016
40 % 36 63 1037
30 % 36 63 1013
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 17 3921
95 % 11 17 4284 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 11 17 4319
70 % 11 17 4221
50 % 11 17 4063
40 % 11 17 3866
30 % 11 17 3523
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 662
95 % 39 68 796 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 827
70 % 39 68 874
50 % 39 69 907
40 % 39 69 942
30 % 39 69 926
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 676
95 % 39 68 801 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 832
70 % 39 68 882
50 % 39 208 207
40 % 39 208 229
30 % 39 208 246
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 649
95 % 39 68 793 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 824
70 % 39 68 870
50 % 39 68 924
40 % 39 203 234
30 % 39 203 251
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 23 2676
95 % 39 74 708 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 74 737
70 % 39 74 780
50 % 39 74 837
40 % 39 76 843
30 % 40 78 824
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 587
95 % 39 74 718 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 39 74 746
70 % 39 74 788
50 % 39 74 848
40 % 40 215 221
30 % 40 215 239
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 658
95 % 39 68 805 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 836
70 % 39 68 868
50 % 39 68 935
40 % 39 213 224
30 % 54 638 41
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1045
95 % 36 47 1263 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 39 68 823
70 % 39 68 869
50 % 56 108 416
40 % 63 133 338
30 % 77 293 158
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 64 706
95 % 37 64 862 Flexibility: No
Max RMSD: 3.2, Avg RMSD: 0.4
PDBFlex
90 % 37 64 895
70 % 37 64 940
50 % 37 64 991
40 % 37 64 1013
30 % 37 64 991
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1058
95 % 36 47 1270 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 47 1296
70 % 36 47 1323
50 % 39 74 842
40 % 39 79 809
30 % 39 79 815
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 42 1212
95 % 33 42 1447 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 33 42 1469
70 % 33 42 1483
50 % 34 46 1337
40 % 34 46 1324
30 % 34 98 628

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures

ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 26 X 50S ribosomal protein L31e 2238
2 1VQO 26 X 50S ribosomal protein L31e 2238
3 1VQ8 26 X 50S ribosomal protein L31e 2238
4 1S72 26 X 50S ribosomal protein L31e 2238
5 1JJ2 25 W RIBOSOMAL PROTEIN L31E 2238
6 1YHQ 26 X 50S ribosomal protein L31e 2238
7 1VQP 26 X 50S ribosomal protein L31e 2238
8 1VQM 26 X 50S ribosomal protein L31e 2238
9 3CC2 24 X 50S ribosomal protein L31e 2238
10 1VQL 26 X 50S ribosomal protein L31e 2238
11 1VQK 26 X 50S ribosomal protein L31e 2238
12 1VQN 27 X 50S ribosomal protein L31e 2238
13 1YIJ 26 X 50S ribosomal protein L31e 2238
14 1YI2 26 X 50S ribosomal protein L31e 2238
15 1VQ9 26 X 50S ribosomal protein L31e 2238
16 1VQ7 26 X 50S ribosomal protein L31e 2238
17 3CCM 24 X 50S ribosomal protein L31e 2238
18 1VQ5 26 X 50S ribosomal protein L31e 2238
19 3CC7 24 X 50S ribosomal protein L31e 2238
20 1YIT 30 X 50S RIBOSOMAL PROTEIN L31E 2238
21 3CCE 24 X 50S ribosomal protein L31e 2238
22 3G6E 25 X 50S ribosomal protein L31e 2238
23 3CPW 25 W 50S ribosomal protein L31e 2238
24 3CCU 24 X 50S ribosomal protein L31e 2238
25 1VQ6 27 X 50S ribosomal protein L31e 2238
26 1M90 26 Y RIBOSOMAL PROTEIN L31E 2238
27 3CCL 24 X 50S ribosomal protein L31e 2238
28 1YJW 30 X 50S RIBOSOMAL PROTEIN L31E 2238
29 1YJ9 26 X 50S ribosomal protein L31e 2238
30 3CD6 24 X 50S ribosomal protein L31e 2238
31 3CCV 24 X 50S ribosomal protein L31e 2238
32 3CC4 24 X 50S ribosomal protein L31e 2238
33 2OTL 25 X 50S ribosomal protein L31e 2238
34 3G71 25 X 50S ribosomal protein L31e 2238
35 1FFK 23 U RIBOSOMAL PROTEIN L31E 2238
36 1VQ4 26 X 50S ribosomal protein L31e 2238
37 1YJN 26 X 50S ribosomal protein L31e 2238
38 3CMA 24 X 50S ribosomal protein L31e 2238
39 3CCS 24 X 50S ribosomal protein L31e 2238
40 3CCQ 24 X 50S ribosomal protein L31e 2238
41 3I56 24 X 50S ribosomal protein L31e 2238
42 3CCR 24 X 50S ribosomal protein L31e 2238
43 2OTJ 25 X 50S ribosomal protein L31e 2238
44 1KQS 27 W RIBOSOMAL PROTEIN L31E 2238
45 3OW2 25 W 50S ribosomal protein L31e 2238
46 3CXC 26 W RIBOSOMAL PROTEIN L31E 2238
47 1QVG 26 W 50S ribosomal protein L31e 2238
48 3CME 24 X 50S ribosomal protein L31e 2238
49 2QEX 25 X 50S ribosomal protein L31e 2238
50 1KC8 25 Y RIBOSOMAL PROTEIN L31E 2238
51 1N8R 25 Y 50S ribosomal protein L31E 2238
52 1Q81 26 Y 50S ribosomal protein L31e 2238
53 1Q82 26 Y 50S ribosomal protein L31e 2238
54 1QVF 26 W 50S ribosomal protein L31e 2238
55 1NJI 25 Y 50S ribosomal protein L31E 2238
56 1K73 25 Y RIBOSOMAL PROTEIN L31E 2238
57 1K9M 25 Y RIBOSOMAL PROTEIN L31E 2238
58 1KD1 25 Y RIBOSOMAL PROTEIN L31E 2238
59 3I55 25 X 50S ribosomal protein L31e 2238
60 1K8A 25 Y RIBOSOMAL PROTEIN L31E 2238
61 1Q86 26 Y 50S ribosomal protein L31e 2238
62 1M1K 25 Y RIBOSOMAL PROTEIN L31E 2238
63 3G4S 25 X 50S ribosomal protein L31e 2238
64 3CCJ 24 X 50S ribosomal protein L31e 2238
65 1W2B 28 W 50S RIBOSOMAL PROTEIN L31E 2238
66 2QA4 26 X 50S RIBOSOMAL PROTEIN L31E 2238
67 1Q7Y 26 Y 50S ribosomal protein L31e 2238
68 4ADX 34 X RPL31E 145262