Sequence Similarity Clusters for the Entities in PDB 3CCS

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 47 994
95 % 39 68 763 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 790
70 % 39 68 843
50 % 39 192 210
40 % 39 192 233
30 % 39 192 247
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 539
95 % 39 74 669 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 685
70 % 39 74 731
50 % 39 74 792
40 % 40 78 787
30 % 40 78 787
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 613
95 % 39 68 749 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 68 777
70 % 39 68 827
50 % 39 202 201
40 % 54 605 22
30 % 54 605 39
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 544
95 % 39 74 678 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 700
70 % 39 74 747
50 % 39 74 800
40 % 39 199 224
30 % 39 199 240
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 20 2934
95 % 36 47 1201 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 36 47 1222
70 % 39 68 828
50 % 39 201 204
40 % 39 201 222
30 % 39 201 238
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 536
95 % 39 74 664 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 39 74 688
70 % 39 74 735
50 % 39 76 771
40 % 39 76 803
30 % 39 79 775
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 624
95 % 39 68 765 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 793
70 % 39 68 845
50 % 39 70 851
40 % 39 70 882
30 % 39 70 872
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 993
95 % 39 68 769 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 797
70 % 39 68 847
50 % 39 68 893
40 % 39 72 848
30 % 39 72 855
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 614
95 % 39 68 750 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 778
70 % 39 68 829
50 % 39 70 861
40 % 39 70 892
30 % 39 71 867
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 637
95 % 39 68 756 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 784
70 % 39 68 835
50 % 39 68 882
40 % 39 68 907
30 % 39 199 241
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 548
95 % 39 74 679 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 39 74 703
70 % 39 74 752
50 % 39 77 759
40 % 53 466 46
30 % 53 466 64
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 640
95 % 39 74 676 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 39 74 698
70 % 39 74 745
50 % 39 74 799
40 % 39 207 214
30 % 39 207 232
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 540
95 % 39 74 671 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 693
70 % 39 74 741
50 % 39 208 195
40 % 39 209 213
30 % 39 209 231
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 70 587
95 % 37 70 726 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 37 70 754
70 % 37 70 797
50 % 37 70 852
40 % 37 70 875
30 % 37 70 874
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 541
95 % 39 74 672 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 694
70 % 39 74 742
50 % 39 74 796
40 % 53 426 54
30 % 53 452 67
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 618
95 % 39 68 757 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 785
70 % 39 68 836
50 % 39 68 883
40 % 39 70 880
30 % 39 71 866
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 625
95 % 39 68 766 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 794
70 % 39 68 846
50 % 39 68 891
40 % 39 68 915
30 % 39 70 878
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 63 687
95 % 36 63 846 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 63 877
70 % 36 63 913
50 % 36 63 960
40 % 36 63 981
30 % 36 63 969
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 17 3683
95 % 11 17 4038 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 11 17 4091
70 % 11 17 4011
50 % 11 17 3902
40 % 11 17 3709
30 % 11 17 3395
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 626
95 % 39 68 751 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 779
70 % 39 68 830
50 % 39 69 863
40 % 39 69 894
30 % 39 69 883
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 639
95 % 39 68 759 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 787
70 % 39 68 839
50 % 39 194 208
40 % 39 194 230
30 % 39 194 245
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 612
95 % 39 68 748 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 776
70 % 39 68 826
50 % 39 68 876
40 % 39 189 236
30 % 39 189 252
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 23 2552
95 % 39 74 668 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 74 691
70 % 39 74 737
50 % 39 74 791
40 % 39 76 806
30 % 40 78 785
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 542
95 % 39 74 674 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 39 74 697
70 % 39 74 744
50 % 39 74 798
40 % 40 201 221
30 % 40 201 236
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 622
95 % 39 68 764 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 791
70 % 39 68 823
50 % 39 68 888
40 % 39 199 225
30 % 54 594 40
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 978
95 % 36 47 1193 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 39 68 774
70 % 39 68 824
50 % 56 107 400
40 % 63 128 319
30 % 77 274 155
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 64 666
95 % 37 64 814 Flexibility: No
Max RMSD: 3.2, Avg RMSD: 0.4
PDBFlex
90 % 37 64 846
70 % 37 64 890
50 % 37 64 939
40 % 37 64 957
30 % 37 64 947
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 987
95 % 36 47 1196 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 47 1218
70 % 36 47 1244
50 % 39 74 793
40 % 39 79 766
30 % 39 79 779
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 42 1124
95 % 33 42 1347 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 33 42 1369
70 % 33 42 1388
50 % 34 46 1259
40 % 34 46 1253
30 % 34 89 650

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures

ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 26 X 50S ribosomal protein L31e 2238
2 1VQO 26 X 50S ribosomal protein L31e 2238
3 1VQ8 26 X 50S ribosomal protein L31e 2238
4 1S72 26 X 50S ribosomal protein L31e 2238
5 1JJ2 25 W RIBOSOMAL PROTEIN L31E 2238
6 1YHQ 26 X 50S ribosomal protein L31e 2238
7 1VQP 26 X 50S ribosomal protein L31e 2238
8 1VQM 26 X 50S ribosomal protein L31e 2238
9 3CC2 24 X 50S ribosomal protein L31e 2238
10 1VQL 26 X 50S ribosomal protein L31e 2238
11 1VQK 26 X 50S ribosomal protein L31e 2238
12 1VQN 27 X 50S ribosomal protein L31e 2238
13 1YIJ 26 X 50S ribosomal protein L31e 2238
14 1YI2 26 X 50S ribosomal protein L31e 2238
15 1VQ9 26 X 50S ribosomal protein L31e 2238
16 1VQ7 26 X 50S ribosomal protein L31e 2238
17 3CCM 24 X 50S ribosomal protein L31e 2238
18 1VQ5 26 X 50S ribosomal protein L31e 2238
19 3CC7 24 X 50S ribosomal protein L31e 2238
20 1YIT 30 X 50S RIBOSOMAL PROTEIN L31E 2238
21 3CCE 24 X 50S ribosomal protein L31e 2238
22 3G6E 25 X 50S ribosomal protein L31e 2238
23 3CPW 25 W 50S ribosomal protein L31e 2238
24 3CCU 24 X 50S ribosomal protein L31e 2238
25 1VQ6 27 X 50S ribosomal protein L31e 2238
26 1M90 26 Y RIBOSOMAL PROTEIN L31E 2238
27 3CCL 24 X 50S ribosomal protein L31e 2238
28 1YJW 30 X 50S RIBOSOMAL PROTEIN L31E 2238
29 1YJ9 26 X 50S ribosomal protein L31e 2238
30 3CD6 24 X 50S ribosomal protein L31e 2238
31 3CCV 24 X 50S ribosomal protein L31e 2238
32 3CC4 24 X 50S ribosomal protein L31e 2238
33 2OTL 25 X 50S ribosomal protein L31e 2238
34 3G71 25 X 50S ribosomal protein L31e 2238
35 1FFK 23 U RIBOSOMAL PROTEIN L31E 2238
36 1VQ4 26 X 50S ribosomal protein L31e 2238
37 1YJN 26 X 50S ribosomal protein L31e 2238
38 3CMA 24 X 50S ribosomal protein L31e 2238
39 3CCS 24 X 50S ribosomal protein L31e 2238
40 3CCQ 24 X 50S ribosomal protein L31e 2238
41 3I56 24 X 50S ribosomal protein L31e 2238
42 3CCR 24 X 50S ribosomal protein L31e 2238
43 2OTJ 25 X 50S ribosomal protein L31e 2238
44 1KQS 27 W RIBOSOMAL PROTEIN L31E 2238
45 3OW2 25 W 50S ribosomal protein L31e 2238
46 3CXC 26 W RIBOSOMAL PROTEIN L31E 2238
47 1QVG 26 W 50S ribosomal protein L31e 2238
48 3CME 24 X 50S ribosomal protein L31e 2238
49 2QEX 25 X 50S ribosomal protein L31e 2238
50 1KC8 25 Y RIBOSOMAL PROTEIN L31E 2238
51 1N8R 25 Y 50S ribosomal protein L31E 2238
52 1Q81 26 Y 50S ribosomal protein L31e 2238
53 1Q82 26 Y 50S ribosomal protein L31e 2238
54 1QVF 26 W 50S ribosomal protein L31e 2238
55 1NJI 25 Y 50S ribosomal protein L31E 2238
56 1K73 25 Y RIBOSOMAL PROTEIN L31E 2238
57 1K9M 25 Y RIBOSOMAL PROTEIN L31E 2238
58 1KD1 25 Y RIBOSOMAL PROTEIN L31E 2238
59 3I55 25 X 50S ribosomal protein L31e 2238
60 1K8A 25 Y RIBOSOMAL PROTEIN L31E 2238
61 1Q86 26 Y 50S ribosomal protein L31e 2238
62 1M1K 25 Y RIBOSOMAL PROTEIN L31E 2238
63 3G4S 25 X 50S ribosomal protein L31e 2238
64 3CCJ 24 X 50S ribosomal protein L31e 2238
65 1W2B 28 W 50S RIBOSOMAL PROTEIN L31E 2238
66 2QA4 26 X 50S RIBOSOMAL PROTEIN L31E 2238
67 1Q7Y 26 Y 50S ribosomal protein L31e 2238
68 4ADX 34 X RPL31E 145262