Sequence Similarity Clusters for the Entities in PDB 3CCS

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 47 984
95 % 39 68 759 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 784
70 % 39 68 835
50 % 39 192 208
40 % 39 192 230
30 % 39 192 246
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 532
95 % 39 74 657 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 679
70 % 39 74 726
50 % 39 74 785
40 % 40 78 783
30 % 40 78 782
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 604
95 % 39 68 743 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 68 770
70 % 39 68 820
50 % 39 202 200
40 % 54 604 21
30 % 54 604 35
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 537
95 % 39 74 671 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 693
70 % 39 74 739
50 % 39 74 793
40 % 39 199 223
30 % 39 199 239
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 20 2914
95 % 36 47 1190 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 36 47 1213
70 % 39 68 821
50 % 39 201 203
40 % 39 201 221
30 % 39 201 237
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 529
95 % 39 74 658 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 39 74 681
70 % 39 74 727
50 % 39 76 765
40 % 39 76 796
30 % 39 79 768
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 617
95 % 39 68 761 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 787
70 % 39 68 837
50 % 39 70 847
40 % 39 70 878
30 % 39 70 869
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 983
95 % 39 68 764 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 790
70 % 39 68 840
50 % 39 68 888
40 % 39 72 843
30 % 39 72 850
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 605
95 % 39 68 744 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 771
70 % 39 68 822
50 % 39 70 857
40 % 39 70 887
30 % 39 71 863
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 630
95 % 39 68 751 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 777
70 % 39 68 828
50 % 39 68 877
40 % 39 68 901
30 % 39 199 240
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 542
95 % 39 74 672 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 39 74 696
70 % 39 74 744
50 % 39 77 754
40 % 53 465 42
30 % 53 465 62
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 633
95 % 39 74 669 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 39 74 691
70 % 39 74 737
50 % 39 74 792
40 % 39 207 213
30 % 39 207 231
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 533
95 % 39 74 664 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 686
70 % 39 74 733
50 % 39 208 194
40 % 39 209 212
30 % 39 209 230
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 70 575
95 % 37 70 714 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 37 70 740
70 % 37 70 788
50 % 37 70 848
40 % 37 70 871
30 % 37 70 871
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 534
95 % 39 74 665 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 687
70 % 39 74 734
50 % 39 74 789
40 % 53 425 51
30 % 53 451 66
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 611
95 % 39 68 752 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 778
70 % 39 68 829
50 % 39 68 878
40 % 39 70 876
30 % 39 71 862
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 618
95 % 39 68 762 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 788
70 % 39 68 838
50 % 39 68 886
40 % 39 68 908
30 % 39 70 875
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 63 682
95 % 36 63 838 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 63 869
70 % 36 63 909
50 % 36 63 955
40 % 36 63 975
30 % 36 63 963
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 17 3662
95 % 11 17 4018 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 11 17 4069
70 % 11 17 3989
50 % 11 17 3883
40 % 11 17 3688
30 % 11 17 3371
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 619
95 % 39 68 745 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 772
70 % 39 68 823
50 % 39 69 859
40 % 39 69 889
30 % 39 69 880
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 632
95 % 39 68 755 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 781
70 % 39 68 832
50 % 39 194 207
40 % 39 194 228
30 % 39 194 244
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 603
95 % 39 68 742 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 769
70 % 39 68 819
50 % 39 68 871
40 % 39 189 233
30 % 39 189 250
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 23 2537
95 % 39 74 662 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 74 684
70 % 39 74 729
50 % 39 74 784
40 % 39 76 799
30 % 40 78 780
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 535
95 % 39 74 667 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 39 74 690
70 % 39 74 736
50 % 39 74 791
40 % 40 201 220
30 % 40 201 235
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 616
95 % 39 68 760 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 785
70 % 39 68 816
50 % 39 68 883
40 % 39 199 224
30 % 54 593 39
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 971
95 % 36 47 1185 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 39 68 767
70 % 39 68 817
50 % 56 107 396
40 % 63 128 313
30 % 77 274 154
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 64 662
95 % 37 64 809 Flexibility: No
Max RMSD: 3.2, Avg RMSD: 0.4
PDBFlex
90 % 37 64 841
70 % 37 64 885
50 % 37 64 934
40 % 37 64 952
30 % 37 64 941
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 978
95 % 36 47 1187 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 47 1210
70 % 36 47 1237
50 % 39 74 786
40 % 39 79 758
30 % 39 79 771
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 42 1115
95 % 33 42 1338 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 33 42 1361
70 % 33 42 1381
50 % 34 46 1255
40 % 34 46 1245
30 % 34 89 645

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 26 X 50S ribosomal protein L31e 2238
2 1VQO 26 X 50S ribosomal protein L31e 2238
3 1VQ8 26 X 50S ribosomal protein L31e 2238
4 1S72 26 X 50S ribosomal protein L31e 2238
5 1JJ2 25 W RIBOSOMAL PROTEIN L31E 2238
6 1YHQ 26 X 50S ribosomal protein L31e 2238
7 1VQP 26 X 50S ribosomal protein L31e 2238
8 1VQM 26 X 50S ribosomal protein L31e 2238
9 3CC2 24 X 50S ribosomal protein L31e 2238
10 1VQL 26 X 50S ribosomal protein L31e 2238
11 1VQK 26 X 50S ribosomal protein L31e 2238
12 1VQN 27 X 50S ribosomal protein L31e 2238
13 1YIJ 26 X 50S ribosomal protein L31e 2238
14 1YI2 26 X 50S ribosomal protein L31e 2238
15 1VQ9 26 X 50S ribosomal protein L31e 2238
16 1VQ7 26 X 50S ribosomal protein L31e 2238
17 3CCM 24 X 50S ribosomal protein L31e 2238
18 1VQ5 26 X 50S ribosomal protein L31e 2238
19 3CC7 24 X 50S ribosomal protein L31e 2238
20 1YIT 30 X 50S RIBOSOMAL PROTEIN L31E 2238
21 3CCE 24 X 50S ribosomal protein L31e 2238
22 3G6E 25 X 50S ribosomal protein L31e 2238
23 3CPW 25 W 50S ribosomal protein L31e 2238
24 3CCU 24 X 50S ribosomal protein L31e 2238
25 1VQ6 27 X 50S ribosomal protein L31e 2238
26 1M90 26 Y RIBOSOMAL PROTEIN L31E 2238
27 3CCL 24 X 50S ribosomal protein L31e 2238
28 1YJW 30 X 50S RIBOSOMAL PROTEIN L31E 2238
29 1YJ9 26 X 50S ribosomal protein L31e 2238
30 3CD6 24 X 50S ribosomal protein L31e 2238
31 3CCV 24 X 50S ribosomal protein L31e 2238
32 3CC4 24 X 50S ribosomal protein L31e 2238
33 2OTL 25 X 50S ribosomal protein L31e 2238
34 3G71 25 X 50S ribosomal protein L31e 2238
35 1FFK 23 U RIBOSOMAL PROTEIN L31E 2238
36 1VQ4 26 X 50S ribosomal protein L31e 2238
37 1YJN 26 X 50S ribosomal protein L31e 2238
38 3CMA 24 X 50S ribosomal protein L31e 2238
39 3CCS 24 X 50S ribosomal protein L31e 2238
40 3CCQ 24 X 50S ribosomal protein L31e 2238
41 3I56 24 X 50S ribosomal protein L31e 2238
42 3CCR 24 X 50S ribosomal protein L31e 2238
43 2OTJ 25 X 50S ribosomal protein L31e 2238
44 1KQS 27 W RIBOSOMAL PROTEIN L31E 2238
45 3OW2 25 W 50S ribosomal protein L31e 2238
46 3CXC 26 W RIBOSOMAL PROTEIN L31E 2238
47 1QVG 26 W 50S ribosomal protein L31e 2238
48 3CME 24 X 50S ribosomal protein L31e 2238
49 2QEX 25 X 50S ribosomal protein L31e 2238
50 1KC8 25 Y RIBOSOMAL PROTEIN L31E 2238
51 1N8R 25 Y 50S ribosomal protein L31E 2238
52 1Q81 26 Y 50S ribosomal protein L31e 2238
53 1Q82 26 Y 50S ribosomal protein L31e 2238
54 1QVF 26 W 50S ribosomal protein L31e 2238
55 1NJI 25 Y 50S ribosomal protein L31E 2238
56 1K73 25 Y RIBOSOMAL PROTEIN L31E 2238
57 1K9M 25 Y RIBOSOMAL PROTEIN L31E 2238
58 1KD1 25 Y RIBOSOMAL PROTEIN L31E 2238
59 3I55 25 X 50S ribosomal protein L31e 2238
60 1K8A 25 Y RIBOSOMAL PROTEIN L31E 2238
61 1Q86 26 Y 50S ribosomal protein L31e 2238
62 1M1K 25 Y RIBOSOMAL PROTEIN L31E 2238
63 3G4S 25 X 50S ribosomal protein L31e 2238
64 3CCJ 24 X 50S ribosomal protein L31e 2238
65 1W2B 28 W 50S RIBOSOMAL PROTEIN L31E 2238
66 2QA4 26 X 50S RIBOSOMAL PROTEIN L31E 2238
67 1Q7Y 26 Y 50S ribosomal protein L31e 2238
68 4ADX 34 X RPL31E 145262