Sequence Similarity Clusters for the Entities in PDB 3CCS

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 43 1128
95 % 39 68 788 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 816
70 % 39 68 863
50 % 39 196 211
40 % 39 196 235
30 % 39 196 249
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 550
95 % 39 74 686 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 702
70 % 39 74 748
50 % 39 74 812
40 % 40 78 805
30 % 40 78 804
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 631
95 % 39 68 772 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 68 799
70 % 39 68 847
50 % 39 206 203
40 % 54 633 23
30 % 54 633 38
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 554
95 % 39 74 695 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 718
70 % 39 74 763
50 % 39 74 822
40 % 39 203 226
30 % 39 203 244
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 20 3025
95 % 36 47 1233 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 36 47 1256
70 % 39 68 848
50 % 39 205 206
40 % 39 205 224
30 % 39 205 241
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 546
95 % 39 74 681 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 39 74 706
70 % 39 74 752
50 % 39 76 789
40 % 39 76 822
30 % 39 79 792
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 645
95 % 39 68 789 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 817
70 % 39 68 865
50 % 39 70 868
40 % 39 70 894
30 % 39 70 887
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1026
95 % 39 68 793 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 821
70 % 39 68 868
50 % 39 68 917
40 % 39 72 866
30 % 39 72 873
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 632
95 % 39 68 773 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 800
70 % 39 68 849
50 % 39 70 880
40 % 39 70 911
30 % 39 71 882
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 657
95 % 39 68 779 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 807
70 % 39 68 854
50 % 39 68 907
40 % 39 68 933
30 % 39 203 243
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 558
95 % 39 74 696 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 39 74 721
70 % 39 74 768
50 % 39 77 776
40 % 53 490 40
30 % 53 490 59
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 660
95 % 39 74 693 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 39 74 716
70 % 39 74 761
50 % 39 74 821
40 % 39 211 218
30 % 39 211 236
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 551
95 % 39 74 688 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 711
70 % 39 74 757
50 % 39 212 200
40 % 39 213 217
30 % 39 213 235
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 70 602
95 % 37 70 742 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 37 70 772
70 % 37 70 813
50 % 37 70 869
40 % 37 70 895
30 % 37 70 889
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 552
95 % 39 74 689 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 712
70 % 39 74 758
50 % 39 74 815
40 % 53 446 52
30 % 53 472 65
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 637
95 % 39 68 780 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 808
70 % 39 68 855
50 % 39 68 908
40 % 39 70 900
30 % 39 71 881
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 633
95 % 39 68 790 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 818
70 % 39 68 866
50 % 39 68 915
40 % 39 68 940
30 % 39 70 898
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 63 713
95 % 36 63 873 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 63 899
70 % 36 63 938
50 % 36 63 986
40 % 36 63 1010
30 % 36 63 997
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 17 3802
95 % 11 17 4158 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 11 17 4207
70 % 11 17 4129
50 % 11 17 4003
40 % 11 17 3800
30 % 11 17 3469
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 646
95 % 39 68 774 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 801
70 % 39 68 850
50 % 39 69 883
40 % 39 69 915
30 % 39 69 903
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 658
95 % 39 68 783 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 811
70 % 39 68 859
50 % 39 198 210
40 % 39 198 232
30 % 39 198 248
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 630
95 % 39 68 771 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 798
70 % 39 68 846
50 % 39 68 901
40 % 39 193 239
30 % 39 193 253
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 23 2597
95 % 39 74 680 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 74 705
70 % 39 74 751
50 % 39 74 807
40 % 39 76 821
30 % 40 78 802
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 553
95 % 39 74 691 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 39 74 715
70 % 39 74 760
50 % 39 74 820
40 % 40 205 220
30 % 40 205 240
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 642
95 % 39 68 787 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 815
70 % 39 68 844
50 % 39 68 913
40 % 39 203 227
30 % 54 622 40
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1011
95 % 36 47 1226 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 39 68 797
70 % 39 68 845
50 % 56 108 400
40 % 63 133 312
30 % 77 283 160
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 64 689
95 % 37 64 841 Flexibility: No
Max RMSD: 3.2, Avg RMSD: 0.4
PDBFlex
90 % 37 64 872
70 % 37 64 913
50 % 37 64 966
40 % 37 64 989
30 % 37 64 976
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1020
95 % 36 47 1230 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 47 1254
70 % 36 47 1271
50 % 39 74 808
40 % 39 79 783
30 % 39 79 791
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 42 1164
95 % 33 42 1378 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 33 42 1405
70 % 33 42 1428
50 % 34 46 1296
40 % 34 46 1284
30 % 34 93 642

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 24 V 50S ribosomal protein L29P 2238
2 1VQO 24 V 50S ribosomal protein L29P 2238
3 1VQ8 24 V 50S ribosomal protein L29P 2238
4 1S72 24 V 50S ribosomal protein L29P 2238
5 1JJ2 23 U RIBOSOMAL PROTEIN L29 2238
6 1YHQ 24 V 50S ribosomal protein L29P 2238
7 1VQP 24 V 50S ribosomal protein L29P 2238
8 1VQM 24 V 50S ribosomal protein L29P 2238
9 3CC2 22 V 50S ribosomal protein L29P 2238
10 1VQL 24 V 50S ribosomal protein L29P 2238
11 1VQK 24 V 50S ribosomal protein L29P 2238
12 1VQN 25 V 50S ribosomal protein L29P 2238
13 1YIJ 24 V 50S ribosomal protein L29P 2238
14 1YI2 24 V 50S ribosomal protein L29P 2238
15 1VQ9 24 V 50S ribosomal protein L29P 2238
16 1VQ7 24 V 50S ribosomal protein L29P 2238
17 3CCM 22 V 50S ribosomal protein L29P 2238
18 1VQ5 24 V 50S ribosomal protein L29P 2238
19 3CC7 22 V 50S ribosomal protein L29P 2238
20 1YIT 28 V 50S RIBOSOMAL PROTEIN L29P 2238
21 3CCE 22 V 50S ribosomal protein L29P 2238
22 3G6E 23 V 50S ribosomal protein L29P 2238
23 3CPW 23 U 50S ribosomal protein L29P 2238
24 3CCU 22 V 50S ribosomal protein L29P 2238
25 1VQ6 25 V 50S ribosomal protein L29P 2238
26 1M90 24 W RIBOSOMAL PROTEIN L29 2238
27 3CCL 22 V 50S ribosomal protein L29P 2238
28 1YJW 28 V 50S RIBOSOMAL PROTEIN L29P 2238
29 1YJ9 24 V 50S ribosomal protein L29P 2238
30 3CD6 22 V 50S ribosomal protein L29P 2238
31 3CCV 22 V 50S ribosomal protein L29P 2238
32 3CC4 22 V 50S ribosomal protein L29P 2238
33 2OTL 23 V 50S ribosomal protein L29P 2238
34 3G71 23 V 50S ribosomal protein L29P 2238
35 1FFK 21 S RIBOSOMAL PROTEIN L29 2238
36 1VQ4 24 V 50S ribosomal protein L29P 2238
37 1YJN 24 V 50S ribosomal protein L29P 2238
38 3CMA 22 V 50S ribosomal protein L29P 2238
39 3CCS 22 V 50S ribosomal protein L29P 2238
40 3CCQ 22 V 50S ribosomal protein L29P 2238
41 3I56 22 V 50S ribosomal protein L29P 2238
42 3CCR 22 V 50S ribosomal protein L29P 2238
43 2OTJ 23 V 50S ribosomal protein L29P 2238
44 1KQS 25 U RIBOSOMAL PROTEIN L29 2238
45 3OW2 23 U 50S ribosomal protein L29P 2238
46 3CXC 24 U RIBOSOMAL PROTEIN L29 2238
47 1QVG 24 U 50S ribosomal protein L29P 2238
48 3CME 22 V 50S ribosomal protein L29P 2238
49 2QEX 23 V 50S ribosomal protein L29P 2238
50 1KC8 23 W RIBOSOMAL PROTEIN L29 2238
51 1N8R 23 W 50S ribosomal protein L29P 2238
52 1Q81 24 W 50S ribosomal protein L29P 2238
53 1Q82 24 W 50S ribosomal protein L29P 2238
54 1QVF 24 U 50S ribosomal protein L29P 2238
55 1NJI 23 W 50S ribosomal protein L29P 2238
56 1K73 23 W RIBOSOMAL PROTEIN L29 2238
57 1K9M 23 W RIBOSOMAL PROTEIN L29 2238
58 1KD1 23 W RIBOSOMAL PROTEIN L29 2238
59 3I55 23 V 50S ribosomal protein L29P 2238
60 1K8A 23 W RIBOSOMAL PROTEIN L29 2238
61 1Q86 24 W 50S ribosomal protein L29P 2238
62 1M1K 23 W RIBOSOMAL PROTEIN L29 2238
63 3G4S 23 V 50S ribosomal protein L29P 2238
64 3CCJ 22 V 50S ribosomal protein L29P 2238
65 1W2B 26 U 50S RIBOSOMAL PROTEIN L24E 2238
66 2QA4 24 V 50S ribosomal protein L29P 2238
67 1Q7Y 24 W 50S ribosomal protein L29P 2238
68 4V4P 22 AW 50S ribosomal protein L29 274
69 4V4R 47 B2 50S ribosomal protein L29 274
70 4V4S 47 B2 50S ribosomal protein L29 274
71 4V4T 46 B2 50S ribosomal protein L29 274
72 4ADX 32 V RPL29 145262
73 1ML5 44 w 50S RIBOSOMAL PROTEIN L29 562
74 4V42 46 BW 50S RIBOSOMAL PROTEIN L29 274