Sequence Similarity Clusters for the Entities in PDB 3CCS

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 838
95 % 39 68 728 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 756
70 % 39 68 805
50 % 39 187 206
40 % 53 560 22
30 % 53 560 39
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 472
95 % 39 74 650 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 676
70 % 39 74 726
50 % 39 74 781
40 % 40 77 780
30 % 40 78 768
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 44 916
95 % 39 68 735 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 68 764
70 % 39 68 817
50 % 39 197 201
40 % 54 583 20
30 % 54 583 35
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 470
95 % 39 74 649 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 675
70 % 39 74 725
50 % 39 74 778
40 % 39 74 817
30 % 53 558 40
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 23 2187
95 % 36 47 1157 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.2
PDBFlex
90 % 36 47 1180
70 % 39 68 808
50 % 39 196 203
40 % 39 196 216
30 % 39 196 227
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 468
95 % 39 74 647 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 39 74 673
70 % 39 74 721
50 % 39 76 755
40 % 39 76 792
30 % 39 79 748
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 542
95 % 39 68 737 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 767
70 % 39 68 820
50 % 39 70 828
40 % 39 70 868
30 % 39 70 853
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 47 845
95 % 39 68 734
90 % 39 68 763
70 % 39 68 816
50 % 39 68 859
40 % 39 72 838
30 % 39 72 831
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 68 544
95 % 39 68 739
90 % 39 68 769
70 % 39 68 822
50 % 39 70 829
40 % 39 70 869
30 % 39 71 843
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 556
95 % 39 68 732 Flexibility: No
Max RMSD: 5.1, Avg RMSD: 0.4
PDBFlex
90 % 39 68 761
70 % 39 68 813
50 % 39 68 856
40 % 39 68 895
30 % 39 199 223
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 475
95 % 39 74 653 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 39 74 680
70 % 39 74 728
50 % 39 77 749
40 % 39 79 753
30 % 53 449 65
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 67 551
95 % 39 74 638
90 % 39 74 667
70 % 39 74 716
50 % 39 74 771
40 % 39 202 210
30 % 39 202 219
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 474
95 % 39 74 652 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 679
70 % 39 74 727
50 % 39 203 195
40 % 39 204 208
30 % 39 204 218
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 70 510
95 % 37 70 703 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 37 70 730
70 % 37 70 779
50 % 37 70 831
40 % 37 70 871
30 % 37 70 856
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 476
95 % 39 74 654 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 681
70 % 39 74 729
50 % 39 74 782
40 % 53 409 52
30 % 53 435 67
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 68 540
95 % 39 68 733
90 % 39 68 762
70 % 39 68 814
50 % 39 68 857
40 % 39 70 867
30 % 39 71 840
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 546
95 % 39 68 741 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 771
70 % 39 68 824
50 % 39 68 864
40 % 39 68 898
30 % 39 68 880
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 63 595
95 % 36 63 818 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 63 849
70 % 36 63 888
50 % 36 63 931
40 % 36 63 961
30 % 36 63 945
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 17 3191
95 % 11 17 3947 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 11 17 4003
70 % 11 17 3948
50 % 11 17 3840
40 % 11 17 3685
30 % 11 17 3449
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 547
95 % 39 68 742 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 772
70 % 39 68 825
50 % 39 69 843
40 % 39 69 883
30 % 39 69 867
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 850
95 % 39 68 743 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 773
70 % 39 68 826
50 % 39 189 204
40 % 39 189 222
30 % 39 189 233
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 545
95 % 39 68 740 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 39 68 770
70 % 39 68 823
50 % 39 68 863
40 % 39 68 897
30 % 39 184 237
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 23 2181
95 % 39 74 641 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 74 670
70 % 39 74 718
50 % 39 74 773
40 % 39 76 788
30 % 40 78 762
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 469
95 % 39 74 648 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 39 74 674
70 % 39 74 722
50 % 39 74 775
40 % 40 196 215
30 % 40 196 225
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 539
95 % 39 68 731 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 759
70 % 39 68 811
50 % 39 68 855
40 % 39 194 218
30 % 54 573 38
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 846
95 % 36 47 1161 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 39 68 766
70 % 39 68 819
50 % 56 107 388
40 % 63 128 286
30 % 63 130 293
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 20 2526
95 % 37 64 789 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 37 64 821
70 % 37 64 863
50 % 37 64 917
40 % 37 64 941
30 % 37 65 915
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 843
95 % 36 47 1159 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 47 1184
70 % 36 47 1209
50 % 39 74 776
40 % 39 79 752
30 % 39 79 750
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 42 967
95 % 33 42 1300 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 33 42 1328
70 % 33 42 1354
50 % 34 46 1231
40 % 34 46 1241
30 % 34 89 620

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 22 T 50S ribosomal protein L24P 2238
2 1VQO 22 T 50S ribosomal protein L24P 2238
3 1VQ8 22 T 50S ribosomal protein L24P 2238
4 1S72 22 T 50S ribosomal protein L24P 2238
5 1JJ2 21 S RIBOSOMAL PROTEIN L24 2238
6 1YHQ 22 T 50S ribosomal protein L24P 2238
7 1VQP 22 T 50S ribosomal protein L24P 2238
8 1VQM 22 T 50S ribosomal protein L24P 2238
9 3CC2 20 T 50S ribosomal protein L24P 2238
10 1VQL 22 T 50S ribosomal protein L24P 2238
11 1VQK 22 T 50S ribosomal protein L24P 2238
12 1VQN 23 T 50S ribosomal protein L24P 2238
13 1YIJ 22 T 50S ribosomal protein L24P 2238
14 1YI2 22 T 50S ribosomal protein L24P 2238
15 1VQ9 22 T 50S ribosomal protein L24P 2238
16 1VQ7 22 T 50S ribosomal protein L24P 2238
17 3CCM 20 T 50S ribosomal protein L24P 2238
18 1VQ5 22 T 50S ribosomal protein L24P 2238
19 3CC7 20 T 50S ribosomal protein L24P 2238
20 1YIT 26 T 50S RIBOSOMAL PROTEIN L24P 2238
21 3CCE 20 T 50S ribosomal protein L24P 2238
22 3G6E 21 T 50S ribosomal protein L24P 2238
23 3CPW 21 S 50S ribosomal protein L24P 2238
24 3CCU 20 T 50S ribosomal protein L24P 2238
25 1VQ6 23 T 50S ribosomal protein L24P 2238
26 1M90 22 U RIBOSOMAL PROTEIN L24 2238
27 3CCL 20 T 50S ribosomal protein L24P 2238
28 1YJW 26 T 50S RIBOSOMAL PROTEIN L24P 2238
29 1YJ9 22 T 50S ribosomal protein L24P 2238
30 3CD6 20 T 50S ribosomal protein L24P 2238
31 3CCV 20 T 50S ribosomal protein L24P 2238
32 3CC4 20 T 50S ribosomal protein L24P 2238
33 2OTL 21 T 50S ribosomal protein L24P 2238
34 3G71 21 T 50S ribosomal protein L24P 2238
35 1FFK 19 Q RIBOSOMAL PROTEIN L24 2238
36 1VQ4 22 T 50S ribosomal protein L24P 2238
37 1YJN 22 T 50S ribosomal protein L24P 2238
38 3CMA 20 T 50S ribosomal protein L24P 2238
39 3CCS 20 T 50S ribosomal protein L24P 2238
40 3CCQ 20 T 50S ribosomal protein L24P 2238
41 3I56 20 T 50S ribosomal protein L24P 2238
42 3CCR 20 T 50S ribosomal protein L24P 2238
43 2OTJ 21 T 50S ribosomal protein L24P 2238
44 1KQS 23 S RIBOSOMAL PROTEIN L24 2238
45 3OW2 21 S 50S ribosomal protein L24P 2238
46 3CXC 22 S RIBOSOMAL PROTEIN L24 2238
47 1QVG 22 S 50S ribosomal protein L24P 2238
48 3CME 20 T 50S ribosomal protein L24P 2238
49 2QEX 21 T 50S ribosomal protein L24P 2238
50 1KC8 21 U RIBOSOMAL PROTEIN L24 2238
51 1N8R 21 U 50S ribosomal protein L24P 2238
52 1Q81 22 U 50S ribosomal protein L24P 2238
53 1Q82 22 U 50S ribosomal protein L24P 2238
54 1QVF 22 S 50S ribosomal protein L24P 2238
55 1NJI 21 U 50S ribosomal protein L24P 2238
56 1K73 21 U RIBOSOMAL PROTEIN L24 2238
57 1K9M 21 U RIBOSOMAL PROTEIN L24 2238
58 1KD1 21 U RIBOSOMAL PROTEIN L24 2238
59 3I55 21 T 50S ribosomal protein L24P 2238
60 1K8A 21 U RIBOSOMAL PROTEIN L24 2238
61 1Q86 22 U 50S ribosomal protein L24P 2238
62 1M1K 21 U RIBOSOMAL PROTEIN L24 2238
63 3G4S 21 T 50S ribosomal protein L24P 2238
64 3CCJ 20 T 50S ribosomal protein L24P 2238
65 1W2B 24 S RIBOSOMAL PROTEIN L24 2238
66 2QA4 22 T 50S ribosomal protein L24P 2238
67 1Q7Y 22 U 50S ribosomal protein L24P 2238
68 4V4P 20 AU 50S ribosomal protein L24 274
69 4V4R 42 BY 50S ribosomal protein 24 274
70 4V4S 42 BY 50S ribosomal protein 24 274
71 4V4T 41 BY 50S ribosomal protein 24 274
72 4ADX 30 T RPL24 145262
73 1ML5 42 u 50S RIBOSOMAL PROTEIN L24 562
74 4V42 44 BU 50S RIBOSOMAL PROTEIN L24 274