Sequence Similarity Clusters for the Entities in PDB 3CCS

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 43 1152
95 % 39 68 789 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 821
70 % 39 68 872
50 % 39 203 209
40 % 39 203 230
30 % 39 203 248
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 567
95 % 39 74 700 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 716
70 % 39 74 762
50 % 39 74 821
40 % 40 78 813
30 % 40 78 813
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 634
95 % 39 68 774 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 68 805
70 % 39 68 856
50 % 39 213 201
40 % 54 644 23
30 % 54 644 38
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 572
95 % 39 74 709 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 733
70 % 39 74 777
50 % 39 74 832
40 % 39 210 222
30 % 39 210 243
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 20 3059
95 % 36 47 1255 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 36 47 1280
70 % 39 68 857
50 % 39 212 202
40 % 39 212 221
30 % 39 212 241
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 563
95 % 39 74 695 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 39 74 720
70 % 39 74 766
50 % 39 76 796
40 % 39 76 826
30 % 39 79 800
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 648
95 % 39 68 790 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 822
70 % 39 68 874
50 % 39 70 880
40 % 39 70 904
30 % 39 70 896
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1039
95 % 39 68 795 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 827
70 % 39 68 877
50 % 39 68 928
40 % 39 72 877
30 % 39 72 881
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 635
95 % 39 68 775 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 806
70 % 39 68 858
50 % 39 70 891
40 % 39 70 920
30 % 39 71 891
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 662
95 % 39 68 780 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 812
70 % 39 68 863
50 % 39 68 918
40 % 39 68 943
30 % 39 210 242
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 575
95 % 39 74 710 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 39 74 736
70 % 39 74 783
50 % 39 77 785
40 % 53 495 39
30 % 53 495 58
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 665
95 % 39 74 707 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 39 74 731
70 % 39 74 775
50 % 39 74 831
40 % 39 218 216
30 % 39 218 237
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 568
95 % 39 74 702 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 726
70 % 39 74 771
50 % 39 219 200
40 % 39 220 214
30 % 39 220 236
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 70 607
95 % 37 70 745 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 37 70 777
70 % 37 70 820
50 % 37 70 881
40 % 37 70 905
30 % 37 70 898
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 569
95 % 39 74 703 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 727
70 % 39 74 772
50 % 39 74 824
40 % 53 450 50
30 % 53 476 63
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 640
95 % 39 68 781 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 813
70 % 39 68 864
50 % 39 68 919
40 % 39 70 910
30 % 39 71 890
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 636
95 % 39 68 791 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 823
70 % 39 68 875
50 % 39 68 926
40 % 39 68 950
30 % 39 70 906
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 63 717
95 % 36 63 877 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 63 906
70 % 36 63 947
50 % 36 63 995
40 % 36 63 1017
30 % 36 63 1002
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 17 3855
95 % 11 17 4213 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 11 17 4253
70 % 11 17 4161
50 % 11 17 4024
40 % 11 17 3819
30 % 11 17 3485
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 649
95 % 39 68 776 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 807
70 % 39 68 859
50 % 39 69 894
40 % 39 69 924
30 % 39 69 912
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 663
95 % 39 68 784 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 816
70 % 39 68 868
50 % 39 205 207
40 % 39 205 226
30 % 39 205 247
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 633
95 % 39 68 773 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 804
70 % 39 68 855
50 % 39 68 911
40 % 39 200 235
30 % 39 200 251
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 23 2627
95 % 39 74 694 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 74 719
70 % 39 74 765
50 % 39 74 816
40 % 39 76 825
30 % 40 78 810
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 571
95 % 39 74 705 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 39 74 730
70 % 39 74 774
50 % 39 74 830
40 % 40 212 220
30 % 40 212 239
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 645
95 % 39 68 788 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 820
70 % 39 68 852
50 % 39 68 924
40 % 39 210 225
30 % 54 633 39
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1020
95 % 36 47 1239 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 39 68 803
70 % 39 68 853
50 % 56 108 405
40 % 63 133 322
30 % 77 290 156
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 64 692
95 % 37 64 842 Flexibility: No
Max RMSD: 3.2, Avg RMSD: 0.4
PDBFlex
90 % 37 64 874
70 % 37 64 919
50 % 37 64 976
40 % 37 64 997
30 % 37 64 981
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1033
95 % 36 47 1247 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 47 1274
70 % 36 47 1303
50 % 39 74 817
40 % 39 79 792
30 % 39 79 799
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 42 1188
95 % 33 42 1419 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 33 42 1443
70 % 33 42 1459
50 % 34 46 1315
40 % 34 46 1305
30 % 34 98 611

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 22 T 50S ribosomal protein L24P 2238
2 1VQO 22 T 50S ribosomal protein L24P 2238
3 1VQ8 22 T 50S ribosomal protein L24P 2238
4 1S72 22 T 50S ribosomal protein L24P 2238
5 1JJ2 21 S RIBOSOMAL PROTEIN L24 2238
6 1YHQ 22 T 50S ribosomal protein L24P 2238
7 1VQP 22 T 50S ribosomal protein L24P 2238
8 1VQM 22 T 50S ribosomal protein L24P 2238
9 3CC2 20 T 50S ribosomal protein L24P 2238
10 1VQL 22 T 50S ribosomal protein L24P 2238
11 1VQK 22 T 50S ribosomal protein L24P 2238
12 1VQN 23 T 50S ribosomal protein L24P 2238
13 1YIJ 22 T 50S ribosomal protein L24P 2238
14 1YI2 22 T 50S ribosomal protein L24P 2238
15 1VQ9 22 T 50S ribosomal protein L24P 2238
16 1VQ7 22 T 50S ribosomal protein L24P 2238
17 3CCM 20 T 50S ribosomal protein L24P 2238
18 1VQ5 22 T 50S ribosomal protein L24P 2238
19 3CC7 20 T 50S ribosomal protein L24P 2238
20 1YIT 26 T 50S RIBOSOMAL PROTEIN L24P 2238
21 3CCE 20 T 50S ribosomal protein L24P 2238
22 3G6E 21 T 50S ribosomal protein L24P 2238
23 3CPW 21 S 50S ribosomal protein L24P 2238
24 3CCU 20 T 50S ribosomal protein L24P 2238
25 1VQ6 23 T 50S ribosomal protein L24P 2238
26 1M90 22 U RIBOSOMAL PROTEIN L24 2238
27 3CCL 20 T 50S ribosomal protein L24P 2238
28 1YJW 26 T 50S RIBOSOMAL PROTEIN L24P 2238
29 1YJ9 22 T 50S ribosomal protein L24P 2238
30 3CD6 20 T 50S ribosomal protein L24P 2238
31 3CCV 20 T 50S ribosomal protein L24P 2238
32 3CC4 20 T 50S ribosomal protein L24P 2238
33 2OTL 21 T 50S ribosomal protein L24P 2238
34 3G71 21 T 50S ribosomal protein L24P 2238
35 1FFK 19 Q RIBOSOMAL PROTEIN L24 2238
36 1VQ4 22 T 50S ribosomal protein L24P 2238
37 1YJN 22 T 50S ribosomal protein L24P 2238
38 3CMA 20 T 50S ribosomal protein L24P 2238
39 3CCS 20 T 50S ribosomal protein L24P 2238
40 3CCQ 20 T 50S ribosomal protein L24P 2238
41 3I56 20 T 50S ribosomal protein L24P 2238
42 3CCR 20 T 50S ribosomal protein L24P 2238
43 2OTJ 21 T 50S ribosomal protein L24P 2238
44 1KQS 23 S RIBOSOMAL PROTEIN L24 2238
45 3OW2 21 S 50S ribosomal protein L24P 2238
46 3CXC 22 S RIBOSOMAL PROTEIN L24 2238
47 1QVG 22 S 50S ribosomal protein L24P 2238
48 3CME 20 T 50S ribosomal protein L24P 2238
49 2QEX 21 T 50S ribosomal protein L24P 2238
50 1KC8 21 U RIBOSOMAL PROTEIN L24 2238
51 1N8R 21 U 50S ribosomal protein L24P 2238
52 1Q81 22 U 50S ribosomal protein L24P 2238
53 1Q82 22 U 50S ribosomal protein L24P 2238
54 1QVF 22 S 50S ribosomal protein L24P 2238
55 1NJI 21 U 50S ribosomal protein L24P 2238
56 1K73 21 U RIBOSOMAL PROTEIN L24 2238
57 1K9M 21 U RIBOSOMAL PROTEIN L24 2238
58 1KD1 21 U RIBOSOMAL PROTEIN L24 2238
59 3I55 21 T 50S ribosomal protein L24P 2238
60 1K8A 21 U RIBOSOMAL PROTEIN L24 2238
61 1Q86 22 U 50S ribosomal protein L24P 2238
62 1M1K 21 U RIBOSOMAL PROTEIN L24 2238
63 3G4S 21 T 50S ribosomal protein L24P 2238
64 3CCJ 20 T 50S ribosomal protein L24P 2238
65 1W2B 24 S RIBOSOMAL PROTEIN L24 2238
66 2QA4 22 T 50S ribosomal protein L24P 2238
67 1Q7Y 22 U 50S ribosomal protein L24P 2238
68 4V4P 20 AU 50S ribosomal protein L24 274
69 4V4R 42 BY 50S ribosomal protein 24 274
70 4V4S 42 BY 50S ribosomal protein 24 274
71 4V4T 41 BY 50S ribosomal protein 24 274
72 4ADX 30 T RPL24 145262
73 1ML5 42 u 50S RIBOSOMAL PROTEIN L24 562
74 4V42 44 BU 50S RIBOSOMAL PROTEIN L24 274