Sequence Similarity Clusters for the Entities in PDB 3CCS

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 47 983
95 % 39 68 748 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 770
70 % 39 68 819
50 % 39 189 208
40 % 39 189 231
30 % 39 189 248
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 521
95 % 39 74 651 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 670
70 % 39 74 714
50 % 39 74 782
40 % 40 78 781
30 % 40 78 777
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 595
95 % 39 68 732 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 68 756
70 % 39 68 804
50 % 39 199 202
40 % 54 595 21
30 % 54 595 36
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 526
95 % 39 74 660 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 684
70 % 39 74 727
50 % 39 74 790
40 % 39 196 223
30 % 39 196 239
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 20 2884
95 % 36 47 1182 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 36 47 1205
70 % 39 68 805
50 % 39 198 205
40 % 39 198 222
30 % 39 198 238
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 518
95 % 39 74 646 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 39 74 672
70 % 39 74 715
50 % 39 76 761
40 % 39 76 795
30 % 39 79 763
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 608
95 % 39 68 750 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 773
70 % 39 68 821
50 % 39 70 842
40 % 39 70 875
30 % 39 70 862
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 982
95 % 39 68 753 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 776
70 % 39 68 824
50 % 39 68 882
40 % 39 72 840
30 % 39 72 842
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 596
95 % 39 68 733 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 757
70 % 39 68 806
50 % 39 70 851
40 % 39 70 882
30 % 39 71 856
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 624
95 % 39 68 740 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 763
70 % 39 68 812
50 % 39 68 871
40 % 39 68 896
30 % 39 196 240
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 531
95 % 39 74 662 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 39 74 686
70 % 39 74 731
50 % 39 77 751
40 % 53 459 45
30 % 53 459 62
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 627
95 % 39 74 658 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 39 74 682
70 % 39 74 725
50 % 39 74 789
40 % 39 204 214
30 % 39 204 231
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 522
95 % 39 74 653 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 677
70 % 39 74 721
50 % 39 205 197
40 % 39 206 212
30 % 39 206 230
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 70 569
95 % 37 70 703 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 37 70 728
70 % 37 70 774
50 % 37 70 843
40 % 37 70 869
30 % 37 70 864
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 523
95 % 39 74 654 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 678
70 % 39 74 722
50 % 39 74 786
40 % 53 419 52
30 % 53 445 66
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 603
95 % 39 68 741 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 764
70 % 39 68 813
50 % 39 68 872
40 % 39 70 873
30 % 39 71 855
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 609
95 % 39 68 751 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 774
70 % 39 68 822
50 % 39 68 880
40 % 39 68 903
30 % 39 70 868
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 63 680
95 % 36 63 834 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 63 862
70 % 36 63 901
50 % 36 63 949
40 % 36 63 972
30 % 36 63 956
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 17 3617
95 % 11 17 3976 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 11 17 4028
70 % 11 17 3953
50 % 11 17 3856
40 % 11 17 3664
30 % 11 17 3353
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 611
95 % 39 68 734 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 758
70 % 39 68 807
50 % 39 69 853
40 % 39 69 884
30 % 39 69 871
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 626
95 % 39 68 744 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 767
70 % 39 68 816
50 % 39 191 207
40 % 39 191 228
30 % 39 191 245
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 594
95 % 39 68 731 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 755
70 % 39 68 803
50 % 39 68 865
40 % 39 186 235
30 % 39 186 250
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 23 2511
95 % 39 74 650 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 74 675
70 % 39 74 717
50 % 39 74 781
40 % 39 76 798
30 % 40 78 775
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 524
95 % 39 74 656 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 39 74 681
70 % 39 74 724
50 % 39 74 788
40 % 40 198 220
30 % 40 198 236
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 607
95 % 39 68 749 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 771
70 % 39 68 801
50 % 39 68 877
40 % 39 196 224
30 % 54 584 40
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 970
95 % 36 47 1177 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 39 68 754
70 % 39 68 802
50 % 56 107 393
40 % 63 128 309
30 % 77 271 153
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 64 657
95 % 37 64 798 Flexibility: No
Max RMSD: 3.2, Avg RMSD: 0.4
PDBFlex
90 % 37 64 827
70 % 37 64 870
50 % 37 64 928
40 % 37 64 946
30 % 37 64 935
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 977
95 % 36 47 1179 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 47 1202
70 % 36 47 1230
50 % 39 74 783
40 % 39 79 756
30 % 39 79 766
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 42 1112
95 % 33 42 1329 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 33 42 1352
70 % 33 42 1373
50 % 34 46 1248
40 % 34 46 1240
30 % 34 89 641

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 19 Q 50S ribosomal protein L21e 2238
2 1VQO 19 Q 50S ribosomal protein L21e 2238
3 1VQ8 19 Q 50S ribosomal protein L21e 2238
4 1S72 19 Q 50S ribosomal protein L21e 2238
5 1JJ2 18 P RIBOSOMAL PROTEIN L21E 2238
6 1YHQ 19 Q 50S ribosomal protein L21e 2238
7 1VQP 19 Q 50S ribosomal protein L21e 2238
8 1VQM 19 Q 50S ribosomal protein L21e 2238
9 3CC2 17 Q 50S ribosomal protein L21e 2238
10 1VQL 19 Q 50S ribosomal protein L21e 2238
11 1VQK 19 Q 50S ribosomal protein L21e 2238
12 1VQN 20 Q 50S ribosomal protein L21e 2238
13 1YIJ 19 Q 50S ribosomal protein L21e 2238
14 1YI2 19 Q 50S ribosomal protein L21e 2238
15 1VQ9 19 Q 50S ribosomal protein L21e 2238
16 1VQ7 19 Q 50S ribosomal protein L21e 2238
17 3CCM 17 Q 50S ribosomal protein L21e 2238
18 1VQ5 19 Q 50S ribosomal protein L21e 2238
19 3CC7 17 Q 50S ribosomal protein L21e 2238
20 1YIT 23 Q 50S RIBOSOMAL PROTEIN L21E 2238
21 3CCE 17 Q 50S ribosomal protein L21e 2238
22 3G6E 18 Q 50S ribosomal protein L21e 2238
23 3CPW 18 P 50S ribosomal protein L21e 2238
24 3CCU 17 Q 50S ribosomal protein L21e 2238
25 1VQ6 20 Q 50S ribosomal protein L21e 2238
26 1M90 19 R RIBOSOMAL PROTEIN L21E 2238
27 3CCL 17 Q 50S ribosomal protein L21e 2238
28 1YJW 23 Q 50S RIBOSOMAL PROTEIN L21E 2238
29 1YJ9 19 Q 50S ribosomal protein L21e 2238
30 3CD6 17 Q 50S ribosomal protein L21e 2238
31 3CCV 17 Q 50S ribosomal protein L21e 2238
32 3CC4 17 Q 50S ribosomal protein L21e 2238
33 2OTL 18 Q 50S ribosomal protein L21e 2238
34 3G71 18 Q 50S ribosomal protein L21e 2238
35 1FFK 16 N RIBOSOMAL PROTEIN L21E 2238
36 1VQ4 19 Q 50S ribosomal protein L21e 2238
37 1YJN 19 Q 50S ribosomal protein L21e 2238
38 3CMA 17 Q 50S ribosomal protein L21e 2238
39 3CCS 17 Q 50S ribosomal protein L21e 2238
40 3CCQ 17 Q 50S ribosomal protein L21e 2238
41 3I56 17 Q 50S ribosomal protein L21e 2238
42 3CCR 17 Q 50S ribosomal protein L21e 2238
43 2OTJ 18 Q 50S ribosomal protein L21e 2238
44 1KQS 20 P RIBOSOMAL PROTEIN L21E 2238
45 3OW2 18 P 50S ribosomal protein L21e 2238
46 3CXC 19 P RIBOSOMAL PROTEIN L21E 2238
47 1QVG 19 P 50S ribosomal protein L21e 2238
48 3CME 17 Q 50S ribosomal protein L21e 2238
49 2QEX 18 Q 50S ribosomal protein L21e 2238
50 1KC8 18 R RIBOSOMAL PROTEIN L21E 2238
51 1N8R 18 R 50S ribosomal protein L21e 2238
52 1Q81 19 R 50S ribosomal protein L21e 2238
53 1Q82 19 R 50S ribosomal protein L21e 2238
54 1QVF 19 P 50S ribosomal protein L21e 2238
55 1NJI 18 R 50S ribosomal protein L21e 2238
56 1K73 18 R RIBOSOMAL PROTEIN L21E 2238
57 1K9M 18 R RIBOSOMAL PROTEIN L21E 2238
58 1KD1 18 R RIBOSOMAL PROTEIN L21E 2238
59 3I55 18 Q 50S ribosomal protein L21e 2238
60 1K8A 18 R RIBOSOMAL PROTEIN L21E 2238
61 1Q86 19 R 50S ribosomal protein L21e 2238
62 1M1K 18 R RIBOSOMAL PROTEIN L21E 2238
63 3G4S 18 Q 50S ribosomal protein L21e 2238
64 3CCJ 17 Q 50S ribosomal protein L21e 2238
65 1W2B 21 P 50S RIBOSOMAL PROTEIN L21E 2238
66 2QA4 19 Q 50S ribosomal protein L21e 2238
67 1Q7Y 19 R 50S ribosomal protein L21e 2238
68 4ADX 27 Q RPL21E 145262