Sequence Similarity Clusters for the Entities in PDB 3CCS

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 43 1154
95 % 39 68 793 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 825
70 % 39 68 875
50 % 39 204 208
40 % 39 204 228
30 % 39 204 247
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 571
95 % 39 74 703 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 719
70 % 39 74 765
50 % 39 74 824
40 % 40 78 816
30 % 40 78 815
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 637
95 % 39 68 778 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 68 809
70 % 39 68 859
50 % 39 214 201
40 % 54 646 24
30 % 54 646 40
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 576
95 % 39 74 712 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 736
70 % 39 74 780
50 % 39 74 835
40 % 39 211 222
30 % 39 211 241
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 20 3064
95 % 36 47 1256 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 36 47 1282
70 % 39 68 860
50 % 39 213 202
40 % 39 213 221
30 % 39 213 239
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 567
95 % 39 74 698 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 39 74 723
70 % 39 74 769
50 % 39 76 799
40 % 39 76 829
30 % 39 79 802
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 650
95 % 39 68 794 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 826
70 % 39 68 877
50 % 39 70 883
40 % 39 70 907
30 % 39 70 899
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1043
95 % 39 68 799 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 831
70 % 39 68 880
50 % 39 68 931
40 % 39 72 880
30 % 39 72 883
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 638
95 % 39 68 779 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 810
70 % 39 68 861
50 % 39 70 894
40 % 39 70 923
30 % 39 71 894
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 665
95 % 39 68 784 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 816
70 % 39 68 866
50 % 39 68 921
40 % 39 68 945
30 % 39 211 240
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 579
95 % 39 74 713 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 39 74 739
70 % 39 74 786
50 % 39 77 788
40 % 53 496 39
30 % 53 496 60
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 668
95 % 39 74 710 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 39 74 734
70 % 39 74 778
50 % 39 74 834
40 % 39 219 217
30 % 39 219 236
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 572
95 % 39 74 705 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 729
70 % 39 74 774
50 % 39 220 200
40 % 39 221 215
30 % 39 221 234
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 70 610
95 % 37 70 749 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 37 70 781
70 % 37 70 824
50 % 37 70 884
40 % 37 70 908
30 % 37 70 901
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 573
95 % 39 74 706 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 730
70 % 39 74 775
50 % 39 74 827
40 % 53 451 50
30 % 53 477 65
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 643
95 % 39 68 785 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 817
70 % 39 68 867
50 % 39 68 922
40 % 39 70 913
30 % 39 71 893
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 639
95 % 39 68 795 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 827
70 % 39 68 878
50 % 39 68 929
40 % 39 68 952
30 % 39 70 908
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 63 721
95 % 36 63 879 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 63 909
70 % 36 63 949
50 % 36 63 999
40 % 36 63 1019
30 % 36 63 1002
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 17 3864
95 % 11 17 4224 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 11 17 4262
70 % 11 17 4169
50 % 11 17 4029
40 % 11 17 3825
30 % 11 17 3487
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 651
95 % 39 68 780 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 811
70 % 39 68 862
50 % 39 69 897
40 % 39 69 927
30 % 39 69 914
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 666
95 % 39 68 788 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 820
70 % 39 68 871
50 % 39 206 205
40 % 39 206 226
30 % 39 206 245
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 636
95 % 39 68 777 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 808
70 % 39 68 858
50 % 39 68 914
40 % 39 201 236
30 % 39 201 250
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 23 2632
95 % 39 74 697 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 74 722
70 % 39 74 768
50 % 39 74 819
40 % 39 76 828
30 % 40 78 812
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 575
95 % 39 74 708 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 39 74 733
70 % 39 74 777
50 % 39 74 833
40 % 40 213 220
30 % 40 213 238
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 648
95 % 39 68 792 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 824
70 % 39 68 855
50 % 39 68 927
40 % 39 211 223
30 % 54 635 41
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1024
95 % 36 47 1241 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 39 68 807
70 % 39 68 856
50 % 56 108 408
40 % 63 133 324
30 % 77 291 155
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 64 695
95 % 37 64 845 Flexibility: No
Max RMSD: 3.2, Avg RMSD: 0.4
PDBFlex
90 % 37 64 878
70 % 37 64 921
50 % 37 64 979
40 % 37 64 999
30 % 37 64 981
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1037
95 % 36 47 1248 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 47 1276
70 % 36 47 1305
50 % 39 74 820
40 % 39 79 796
30 % 39 79 801
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 42 1190
95 % 33 42 1420 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 33 42 1444
70 % 33 42 1462
50 % 34 46 1318
40 % 34 46 1308
30 % 34 98 612

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 19 Q 50S ribosomal protein L21e 2238
2 1VQO 19 Q 50S ribosomal protein L21e 2238
3 1VQ8 19 Q 50S ribosomal protein L21e 2238
4 1S72 19 Q 50S ribosomal protein L21e 2238
5 1JJ2 18 P RIBOSOMAL PROTEIN L21E 2238
6 1YHQ 19 Q 50S ribosomal protein L21e 2238
7 1VQP 19 Q 50S ribosomal protein L21e 2238
8 1VQM 19 Q 50S ribosomal protein L21e 2238
9 3CC2 17 Q 50S ribosomal protein L21e 2238
10 1VQL 19 Q 50S ribosomal protein L21e 2238
11 1VQK 19 Q 50S ribosomal protein L21e 2238
12 1VQN 20 Q 50S ribosomal protein L21e 2238
13 1YIJ 19 Q 50S ribosomal protein L21e 2238
14 1YI2 19 Q 50S ribosomal protein L21e 2238
15 1VQ9 19 Q 50S ribosomal protein L21e 2238
16 1VQ7 19 Q 50S ribosomal protein L21e 2238
17 3CCM 17 Q 50S ribosomal protein L21e 2238
18 1VQ5 19 Q 50S ribosomal protein L21e 2238
19 3CC7 17 Q 50S ribosomal protein L21e 2238
20 1YIT 23 Q 50S RIBOSOMAL PROTEIN L21E 2238
21 3CCE 17 Q 50S ribosomal protein L21e 2238
22 3G6E 18 Q 50S ribosomal protein L21e 2238
23 3CPW 18 P 50S ribosomal protein L21e 2238
24 3CCU 17 Q 50S ribosomal protein L21e 2238
25 1VQ6 20 Q 50S ribosomal protein L21e 2238
26 1M90 19 R RIBOSOMAL PROTEIN L21E 2238
27 3CCL 17 Q 50S ribosomal protein L21e 2238
28 1YJW 23 Q 50S RIBOSOMAL PROTEIN L21E 2238
29 1YJ9 19 Q 50S ribosomal protein L21e 2238
30 3CD6 17 Q 50S ribosomal protein L21e 2238
31 3CCV 17 Q 50S ribosomal protein L21e 2238
32 3CC4 17 Q 50S ribosomal protein L21e 2238
33 2OTL 18 Q 50S ribosomal protein L21e 2238
34 3G71 18 Q 50S ribosomal protein L21e 2238
35 1FFK 16 N RIBOSOMAL PROTEIN L21E 2238
36 1VQ4 19 Q 50S ribosomal protein L21e 2238
37 1YJN 19 Q 50S ribosomal protein L21e 2238
38 3CMA 17 Q 50S ribosomal protein L21e 2238
39 3CCS 17 Q 50S ribosomal protein L21e 2238
40 3CCQ 17 Q 50S ribosomal protein L21e 2238
41 3I56 17 Q 50S ribosomal protein L21e 2238
42 3CCR 17 Q 50S ribosomal protein L21e 2238
43 2OTJ 18 Q 50S ribosomal protein L21e 2238
44 1KQS 20 P RIBOSOMAL PROTEIN L21E 2238
45 3OW2 18 P 50S ribosomal protein L21e 2238
46 3CXC 19 P RIBOSOMAL PROTEIN L21E 2238
47 1QVG 19 P 50S ribosomal protein L21e 2238
48 3CME 17 Q 50S ribosomal protein L21e 2238
49 2QEX 18 Q 50S ribosomal protein L21e 2238
50 1KC8 18 R RIBOSOMAL PROTEIN L21E 2238
51 1N8R 18 R 50S ribosomal protein L21e 2238
52 1Q81 19 R 50S ribosomal protein L21e 2238
53 1Q82 19 R 50S ribosomal protein L21e 2238
54 1QVF 19 P 50S ribosomal protein L21e 2238
55 1NJI 18 R 50S ribosomal protein L21e 2238
56 1K73 18 R RIBOSOMAL PROTEIN L21E 2238
57 1K9M 18 R RIBOSOMAL PROTEIN L21E 2238
58 1KD1 18 R RIBOSOMAL PROTEIN L21E 2238
59 3I55 18 Q 50S ribosomal protein L21e 2238
60 1K8A 18 R RIBOSOMAL PROTEIN L21E 2238
61 1Q86 19 R 50S ribosomal protein L21e 2238
62 1M1K 18 R RIBOSOMAL PROTEIN L21E 2238
63 3G4S 18 Q 50S ribosomal protein L21e 2238
64 3CCJ 17 Q 50S ribosomal protein L21e 2238
65 1W2B 21 P 50S RIBOSOMAL PROTEIN L21E 2238
66 2QA4 19 Q 50S ribosomal protein L21e 2238
67 1Q7Y 19 R 50S ribosomal protein L21e 2238
68 4ADX 27 Q RPL21E 145262