Sequence Similarity Clusters for the Entities in PDB 3CCS

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 43 1152
95 % 39 68 789 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 821
70 % 39 68 871
50 % 39 203 209
40 % 39 203 230
30 % 39 203 247
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 567
95 % 39 74 699 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 716
70 % 39 74 762
50 % 39 74 819
40 % 40 78 811
30 % 40 78 810
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 634
95 % 39 68 774 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 68 805
70 % 39 68 855
50 % 39 213 201
40 % 54 642 23
30 % 54 642 39
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 572
95 % 39 74 708 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 733
70 % 39 74 777
50 % 39 74 830
40 % 39 210 222
30 % 39 210 242
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 20 3057
95 % 36 47 1251 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 36 47 1278
70 % 39 68 856
50 % 39 212 202
40 % 39 212 221
30 % 39 212 240
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 563
95 % 39 74 694 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 39 74 720
70 % 39 74 766
50 % 39 76 793
40 % 39 76 825
30 % 39 79 798
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 647
95 % 39 68 790 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 822
70 % 39 68 873
50 % 39 70 877
40 % 39 70 903
30 % 39 70 894
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1039
95 % 39 68 795 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 827
70 % 39 68 876
50 % 39 68 925
40 % 39 72 877
30 % 39 72 880
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 635
95 % 39 68 775 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 806
70 % 39 68 857
50 % 39 70 888
40 % 39 70 919
30 % 39 71 889
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 662
95 % 39 68 780 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 812
70 % 39 68 862
50 % 39 68 916
40 % 39 68 942
30 % 39 210 241
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 575
95 % 39 74 709 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 39 74 736
70 % 39 74 783
50 % 39 77 784
40 % 53 493 40
30 % 53 493 60
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 665
95 % 39 74 706 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 39 74 731
70 % 39 74 775
50 % 39 74 829
40 % 39 218 216
30 % 39 218 236
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 568
95 % 39 74 701 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 726
70 % 39 74 771
50 % 39 219 200
40 % 39 220 214
30 % 39 220 235
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 70 607
95 % 37 70 745 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 37 70 777
70 % 37 70 820
50 % 37 70 878
40 % 37 70 904
30 % 37 70 896
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 569
95 % 39 74 702 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 727
70 % 39 74 772
50 % 39 74 822
40 % 53 448 52
30 % 53 474 65
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 639
95 % 39 68 781 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 813
70 % 39 68 863
50 % 39 68 917
40 % 39 70 909
30 % 39 71 888
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 636
95 % 39 68 791 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 823
70 % 39 68 874
50 % 39 68 924
40 % 39 68 949
30 % 39 70 903
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 63 717
95 % 36 63 877 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 63 907
70 % 36 63 947
50 % 36 63 995
40 % 36 63 1017
30 % 36 63 1001
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 17 3848
95 % 11 17 4206 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 11 17 4245
70 % 11 17 4156
50 % 11 17 4020
40 % 11 17 3813
30 % 11 17 3475
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 648
95 % 39 68 776 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 807
70 % 39 68 858
50 % 39 69 891
40 % 39 69 923
30 % 39 69 909
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 663
95 % 39 68 784 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 816
70 % 39 68 867
50 % 39 205 207
40 % 39 205 226
30 % 39 205 246
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 633
95 % 39 68 773 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 804
70 % 39 68 854
50 % 39 68 909
40 % 39 200 234
30 % 39 200 250
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 23 2623
95 % 39 74 693 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 74 719
70 % 39 74 765
50 % 39 74 814
40 % 39 76 824
30 % 40 78 808
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 571
95 % 39 74 704 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 39 74 730
70 % 39 74 774
50 % 39 74 828
40 % 40 212 220
30 % 40 212 238
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 644
95 % 39 68 788 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 820
70 % 39 68 851
50 % 39 68 922
40 % 39 210 224
30 % 54 631 40
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1019
95 % 36 47 1236 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 39 68 803
70 % 39 68 852
50 % 56 108 404
40 % 63 133 322
30 % 77 290 155
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 64 692
95 % 37 64 842 Flexibility: No
Max RMSD: 3.2, Avg RMSD: 0.4
PDBFlex
90 % 37 64 875
70 % 37 64 919
50 % 37 64 976
40 % 37 64 997
30 % 37 64 980
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1032
95 % 36 47 1243 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 47 1272
70 % 36 47 1301
50 % 39 74 815
40 % 39 79 790
30 % 39 79 797
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 42 1189
95 % 33 42 1417 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 33 42 1442
70 % 33 42 1458
50 % 34 46 1314
40 % 34 46 1303
30 % 34 98 608

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 19 Q 50S ribosomal protein L21e 2238
2 1VQO 19 Q 50S ribosomal protein L21e 2238
3 1VQ8 19 Q 50S ribosomal protein L21e 2238
4 1S72 19 Q 50S ribosomal protein L21e 2238
5 1JJ2 18 P RIBOSOMAL PROTEIN L21E 2238
6 1YHQ 19 Q 50S ribosomal protein L21e 2238
7 1VQP 19 Q 50S ribosomal protein L21e 2238
8 1VQM 19 Q 50S ribosomal protein L21e 2238
9 3CC2 17 Q 50S ribosomal protein L21e 2238
10 1VQL 19 Q 50S ribosomal protein L21e 2238
11 1VQK 19 Q 50S ribosomal protein L21e 2238
12 1VQN 20 Q 50S ribosomal protein L21e 2238
13 1YIJ 19 Q 50S ribosomal protein L21e 2238
14 1YI2 19 Q 50S ribosomal protein L21e 2238
15 1VQ9 19 Q 50S ribosomal protein L21e 2238
16 1VQ7 19 Q 50S ribosomal protein L21e 2238
17 3CCM 17 Q 50S ribosomal protein L21e 2238
18 1VQ5 19 Q 50S ribosomal protein L21e 2238
19 3CC7 17 Q 50S ribosomal protein L21e 2238
20 1YIT 23 Q 50S RIBOSOMAL PROTEIN L21E 2238
21 3CCE 17 Q 50S ribosomal protein L21e 2238
22 3G6E 18 Q 50S ribosomal protein L21e 2238
23 3CPW 18 P 50S ribosomal protein L21e 2238
24 3CCU 17 Q 50S ribosomal protein L21e 2238
25 1VQ6 20 Q 50S ribosomal protein L21e 2238
26 1M90 19 R RIBOSOMAL PROTEIN L21E 2238
27 3CCL 17 Q 50S ribosomal protein L21e 2238
28 1YJW 23 Q 50S RIBOSOMAL PROTEIN L21E 2238
29 1YJ9 19 Q 50S ribosomal protein L21e 2238
30 3CD6 17 Q 50S ribosomal protein L21e 2238
31 3CCV 17 Q 50S ribosomal protein L21e 2238
32 3CC4 17 Q 50S ribosomal protein L21e 2238
33 2OTL 18 Q 50S ribosomal protein L21e 2238
34 3G71 18 Q 50S ribosomal protein L21e 2238
35 1FFK 16 N RIBOSOMAL PROTEIN L21E 2238
36 1VQ4 19 Q 50S ribosomal protein L21e 2238
37 1YJN 19 Q 50S ribosomal protein L21e 2238
38 3CMA 17 Q 50S ribosomal protein L21e 2238
39 3CCS 17 Q 50S ribosomal protein L21e 2238
40 3CCQ 17 Q 50S ribosomal protein L21e 2238
41 3I56 17 Q 50S ribosomal protein L21e 2238
42 3CCR 17 Q 50S ribosomal protein L21e 2238
43 2OTJ 18 Q 50S ribosomal protein L21e 2238
44 1KQS 20 P RIBOSOMAL PROTEIN L21E 2238
45 3OW2 18 P 50S ribosomal protein L21e 2238
46 3CXC 19 P RIBOSOMAL PROTEIN L21E 2238
47 1QVG 19 P 50S ribosomal protein L21e 2238
48 3CME 17 Q 50S ribosomal protein L21e 2238
49 2QEX 18 Q 50S ribosomal protein L21e 2238
50 1KC8 18 R RIBOSOMAL PROTEIN L21E 2238
51 1N8R 18 R 50S ribosomal protein L21e 2238
52 1Q81 19 R 50S ribosomal protein L21e 2238
53 1Q82 19 R 50S ribosomal protein L21e 2238
54 1QVF 19 P 50S ribosomal protein L21e 2238
55 1NJI 18 R 50S ribosomal protein L21e 2238
56 1K73 18 R RIBOSOMAL PROTEIN L21E 2238
57 1K9M 18 R RIBOSOMAL PROTEIN L21E 2238
58 1KD1 18 R RIBOSOMAL PROTEIN L21E 2238
59 3I55 18 Q 50S ribosomal protein L21e 2238
60 1K8A 18 R RIBOSOMAL PROTEIN L21E 2238
61 1Q86 19 R 50S ribosomal protein L21e 2238
62 1M1K 18 R RIBOSOMAL PROTEIN L21E 2238
63 3G4S 18 Q 50S ribosomal protein L21e 2238
64 3CCJ 17 Q 50S ribosomal protein L21e 2238
65 1W2B 21 P 50S RIBOSOMAL PROTEIN L21E 2238
66 2QA4 19 Q 50S ribosomal protein L21e 2238
67 1Q7Y 19 R 50S ribosomal protein L21e 2238
68 4V4N 64 AR 50S ribosomal protein L21E SEE REMARK 999 2190
69 4V6U 48 BR 50S ribosomal protein L21e 2261
70 4ADX 27 Q RPL21E 145262