Sequence Similarity Clusters for the Entities in PDB 3CCS

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 43 1107
95 % 39 68 777 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 803
70 % 39 68 856
50 % 39 192 213
40 % 39 192 234
30 % 39 192 249
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 541
95 % 39 74 679 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 695
70 % 39 74 740
50 % 39 74 802
40 % 40 78 797
30 % 40 78 795
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 617
95 % 39 68 759 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 68 786
70 % 39 68 838
50 % 39 202 205
40 % 54 614 23
30 % 54 614 39
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 545
95 % 39 74 687 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 709
70 % 39 74 754
50 % 39 74 810
40 % 39 199 227
30 % 39 199 244
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 20 2976
95 % 36 47 1211 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 36 47 1232
70 % 39 68 839
50 % 39 201 207
40 % 39 201 224
30 % 39 201 241
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 538
95 % 39 74 675 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 39 74 699
70 % 39 74 745
50 % 39 76 783
40 % 39 76 816
30 % 39 79 780
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 632
95 % 39 68 778 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 805
70 % 39 68 858
50 % 39 70 862
40 % 39 70 892
30 % 39 70 880
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1006
95 % 39 68 780 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 807
70 % 39 68 859
50 % 39 68 907
40 % 39 72 858
30 % 39 72 863
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 618
95 % 39 68 760 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 787
70 % 39 68 840
50 % 39 70 871
40 % 39 70 901
30 % 39 71 874
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 644
95 % 39 68 769 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 796
70 % 39 68 848
50 % 39 68 896
40 % 39 68 920
30 % 39 199 245
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 549
95 % 39 74 688 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 39 74 712
70 % 39 74 759
50 % 39 77 769
40 % 53 475 45
30 % 53 475 64
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 647
95 % 39 74 686 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 39 74 708
70 % 39 74 753
50 % 39 74 809
40 % 39 207 217
30 % 39 207 235
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 542
95 % 39 74 681 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 703
70 % 39 74 749
50 % 39 208 198
40 % 39 209 216
30 % 39 209 234
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 70 590
95 % 37 70 732 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 37 70 760
70 % 37 70 805
50 % 37 70 863
40 % 37 70 886
30 % 37 70 882
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 543
95 % 39 74 682 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 704
70 % 39 74 750
50 % 39 74 805
40 % 53 435 52
30 % 53 461 67
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 42 626
95 % 39 68 770 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 797
70 % 39 68 849
50 % 39 68 897
40 % 39 70 891
30 % 39 71 873
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 625
95 % 39 68 767 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 794
70 % 39 68 846
50 % 39 68 893
40 % 39 68 918
30 % 39 70 884
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 63 699
95 % 36 63 861 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 63 892
70 % 36 63 927
50 % 36 29 973
40 % 36 63 996
30 % 36 63 982
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 17 3736
95 % 11 17 4098 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 11 17 4148
70 % 11 17 4070
50 % 11 17 3951
40 % 11 17 3757
30 % 11 17 3430
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 633
95 % 39 42 761 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 788
70 % 39 68 841
50 % 39 69 873
40 % 39 69 904
30 % 39 69 891
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 646
95 % 39 68 772 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 799
70 % 39 68 852
50 % 39 194 210
40 % 39 194 232
30 % 39 194 247
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 615
95 % 39 68 757 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 784
70 % 39 68 836
50 % 39 68 889
40 % 39 189 240
30 % 39 189 254
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 23 2562
95 % 39 74 674 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 54 698
70 % 39 74 744
50 % 39 74 800
40 % 39 76 815
30 % 40 78 793
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 544
95 % 39 74 684 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 39 74 707
70 % 39 74 752
50 % 39 74 808
40 % 40 201 223
30 % 40 201 240
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 630
95 % 39 68 776 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 802
70 % 39 68 834
50 % 39 68 902
40 % 39 199 228
30 % 54 603 40
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 991
95 % 36 47 1204 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 39 68 783
70 % 39 68 835
50 % 56 107 400
40 % 63 130 314
30 % 77 276 155
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 64 675
95 % 37 64 827 Flexibility: No
Max RMSD: 3.2, Avg RMSD: 0.4
PDBFlex
90 % 37 64 860
70 % 37 64 904
50 % 37 64 953
40 % 37 64 972
30 % 37 64 958
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1000
95 % 36 47 1207 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 47 1229
70 % 36 47 1256
50 % 39 74 803
40 % 39 79 774
30 % 39 79 786
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 37 1142
95 % 33 37 1359 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 33 42 1384
70 % 33 42 1408
50 % 34 46 1273
40 % 34 46 1265
30 % 34 89 666

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 16 N 50S ribosomal protein L18P 2238
2 1VQO 16 N 50S ribosomal protein L18P 2238
3 1VQ8 16 N 50S ribosomal protein L18P 2238
4 1S72 16 N 50S ribosomal protein L18P 2238
5 1JJ2 15 M RIBOSOMAL PROTEIN L18 2238
6 1YHQ 16 N 50S ribosomal protein L18P 2238
7 1VQP 16 N 50S ribosomal protein L18P 2238
8 1VQM 16 N 50S ribosomal protein L18P 2238
9 3CC2 14 N 50S ribosomal protein L18P 2238
10 1VQL 16 N 50S ribosomal protein L18P 2238
11 1VQK 16 N 50S ribosomal protein L18P 2238
12 1VQN 17 N 50S ribosomal protein L18P 2238
13 1YIJ 16 N 50S ribosomal protein L18P 2238
14 1YI2 16 N 50S ribosomal protein L18P 2238
15 1VQ9 16 N 50S ribosomal protein L18P 2238
16 1VQ7 16 N 50S ribosomal protein L18P 2238
17 3CCM 14 N 50S ribosomal protein L18P 2238
18 1VQ5 16 N 50S ribosomal protein L18P 2238
19 3CC7 14 N 50S ribosomal protein L18P 2238
20 1YIT 20 N 50S RIBOSOMAL PROTEIN L18P 2238
21 3CCE 14 N 50S ribosomal protein L18P 2238
22 3G6E 15 N 50S ribosomal protein L18P 2238
23 3CPW 15 M 50S ribosomal protein L18P 2238
24 3CCU 14 N 50S ribosomal protein L18P 2238
25 1VQ6 17 N 50S ribosomal protein L18P 2238
26 1M90 16 O RIBOSOMAL PROTEIN L18 2238
27 3CCL 14 N 50S ribosomal protein L18P 2238
28 1YJW 20 N 50S RIBOSOMAL PROTEIN L18P 2238
29 1YJ9 16 N 50S ribosomal protein L18P 2238
30 3CD6 14 N 50S ribosomal protein L18P 2238
31 3CCV 14 N 50S ribosomal protein L18P 2238
32 3CC4 14 N 50S ribosomal protein L18P 2238
33 2OTL 15 N 50S ribosomal protein L18P 2238
34 3G71 15 N 50S ribosomal protein L18P 2238
35 1FFK 13 K RIBOSOMAL PROTEIN L18 2238
36 1VQ4 16 N 50S ribosomal protein L18P 2238
37 1YJN 16 N 50S ribosomal protein L18P 2238
38 3CMA 14 N 50S ribosomal protein L18P 2238
39 3CCS 14 N 50S ribosomal protein L18P 2238
40 3CCQ 14 N 50S ribosomal protein L18P 2238
41 3I56 14 N 50S ribosomal protein L18P 2238
42 3CCR 14 N 50S ribosomal protein L18P 2238
43 2OTJ 15 N 50S ribosomal protein L18P 2238
44 1KQS 17 M RIBOSOMAL PROTEIN L18 2238
45 3OW2 15 M 50S ribosomal protein L18P 2238
46 3CXC 16 M RIBOSOMAL PROTEIN L18 2238
47 1QVG 16 M 50S ribosomal protein L18P 2238
48 3CME 14 N 50S ribosomal protein L18P 2238
49 2QEX 15 N 50S ribosomal protein L18P 2238
50 1KC8 15 O RIBOSOMAL PROTEIN L18 2238
51 1N8R 15 O 50S ribosomal protein L18P 2238
52 1Q81 16 O 50S ribosomal protein L18P 2238
53 1Q82 16 O 50S ribosomal protein L18P 2238
54 1QVF 16 M 50S ribosomal protein L18P 2238
55 1NJI 15 O 50S ribosomal protein L18P 2238
56 1K73 15 O RIBOSOMAL PROTEIN L18 2238
57 1K9M 15 O RIBOSOMAL PROTEIN L18 2238
58 1KD1 15 O RIBOSOMAL PROTEIN L18 2238
59 3I55 15 N 50S ribosomal protein L18P 2238
60 1K8A 15 O RIBOSOMAL PROTEIN L18 2238
61 1Q86 16 O 50S ribosomal protein L18P 2238
62 1M1K 15 O RIBOSOMAL PROTEIN L18 2238
63 3G4S 15 N 50S ribosomal protein L18P 2238
64 3CCJ 14 N 50S ribosomal protein L18P 2238
65 1W2B 18 M 50S RIBOSOMAL PROTEIN L18P 2238
66 2QA4 16 N 50S ribosomal protein L18P 2238
67 1Q7Y 16 O 50S ribosomal protein L18P 2238
68 4V4P 16 AQ 50S ribosomal protein L18 274
69 4V4R 38 BS 50S ribosomal protein L18 274
70 4V4S 38 BS 50S ribosomal protein L18 274
71 4V4T 37 BS 50S ribosomal protein L18 274
72 4ADX 24 N RPL18 145262
73 1ML5 38 q 50S RIBOSOMAL PROTEIN L18 562
74 4V42 40 BQ 50S RIBOSOMAL PROTEIN L18 274