Sequence Similarity Clusters for the Entities in PDB 3CCS

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 43 1093
95 % 39 68 767 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 794
70 % 39 68 847
50 % 39 192 212
40 % 39 192 234
30 % 39 192 248
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 540
95 % 39 74 671 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 687
70 % 39 74 733
50 % 39 74 794
40 % 40 78 791
30 % 40 78 791
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 615
95 % 39 68 751 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 68 779
70 % 39 68 830
50 % 39 202 204
40 % 54 609 22
30 % 54 609 38
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 545
95 % 39 74 680 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 702
70 % 39 74 749
50 % 39 74 802
40 % 39 199 226
30 % 39 199 242
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 20 2941
95 % 36 47 1204 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 36 47 1226
70 % 39 68 831
50 % 39 201 206
40 % 39 201 224
30 % 39 201 240
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 537
95 % 39 74 666 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 39 74 690
70 % 39 74 737
50 % 39 76 775
40 % 39 76 807
30 % 39 79 778
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 627
95 % 39 68 768 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 796
70 % 39 68 849
50 % 39 70 854
40 % 39 70 885
30 % 39 70 874
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 997
95 % 39 68 771 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 799
70 % 39 68 850
50 % 39 68 897
40 % 39 72 851
30 % 39 72 857
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 616
95 % 39 68 752 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 780
70 % 39 68 832
50 % 39 70 864
40 % 39 70 895
30 % 39 71 869
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 639
95 % 39 68 759 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 787
70 % 39 68 839
50 % 39 68 887
40 % 39 68 911
30 % 39 199 243
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 549
95 % 39 74 681 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 39 74 705
70 % 39 74 754
50 % 39 77 763
40 % 53 470 45
30 % 53 470 62
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 642
95 % 39 74 678 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 39 74 700
70 % 39 74 747
50 % 39 74 801
40 % 39 207 216
30 % 39 207 234
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 541
95 % 39 74 673 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 695
70 % 39 74 743
50 % 39 208 197
40 % 39 209 215
30 % 39 209 233
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 70 588
95 % 37 70 728 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 37 70 756
70 % 37 70 799
50 % 37 70 855
40 % 37 70 878
30 % 37 70 876
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 542
95 % 39 74 674 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 696
70 % 39 74 744
50 % 39 74 798
40 % 53 430 52
30 % 53 456 67
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 621
95 % 39 68 760 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 788
70 % 39 68 840
50 % 39 68 888
40 % 39 70 883
30 % 39 71 868
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 620
95 % 39 68 758 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 786
70 % 39 68 838
50 % 39 68 884
40 % 39 68 909
30 % 39 70 878
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 63 689
95 % 36 63 850 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 63 882
70 % 36 63 917
50 % 36 63 963
40 % 36 63 983
30 % 36 63 970
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 17 3690
95 % 11 17 4046 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 11 17 4097
70 % 11 17 4020
50 % 11 17 3908
40 % 11 17 3717
30 % 11 17 3406
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 628
95 % 39 68 753 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 781
70 % 39 68 833
50 % 39 69 866
40 % 39 69 897
30 % 39 69 885
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 641
95 % 39 68 762 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 790
70 % 39 68 843
50 % 39 194 210
40 % 39 194 231
30 % 39 194 246
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 614
95 % 39 68 750 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 778
70 % 39 68 829
50 % 39 68 880
40 % 39 189 238
30 % 39 189 254
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 23 2561
95 % 39 74 670 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 74 693
70 % 39 74 739
50 % 39 74 793
40 % 39 76 809
30 % 40 78 790
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 543
95 % 39 74 676 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 39 74 699
70 % 39 74 746
50 % 39 74 800
40 % 40 201 223
30 % 40 201 238
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 625
95 % 39 68 766 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 793
70 % 39 68 826
50 % 39 68 893
40 % 39 199 227
30 % 54 598 40
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 982
95 % 36 47 1196 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 39 68 776
70 % 39 68 827
50 % 56 107 401
40 % 63 128 321
30 % 77 274 155
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 64 668
95 % 37 64 818 Flexibility: No
Max RMSD: 3.2, Avg RMSD: 0.4
PDBFlex
90 % 37 64 851
70 % 37 64 894
50 % 37 64 942
40 % 37 64 959
30 % 37 64 948
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 991
95 % 36 47 1199 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 47 1222
70 % 36 47 1247
50 % 39 74 795
40 % 39 79 769
30 % 39 79 783
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 42 1129
95 % 33 42 1350 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 33 42 1373
70 % 33 42 1392
50 % 34 46 1262
40 % 34 46 1256
30 % 34 89 662

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 15 M 50S ribosomal protein L15e 2238
2 1VQO 15 M 50S Ribosomal Protein L15E 2238
3 1VQ8 15 M 50S Ribosomal Protein L15E 2238
4 1S72 15 M 50S ribosomal protein L15e 2238
5 1YHQ 15 M 50S Ribosomal Protein L15E 2238
6 1VQP 15 M 50S Ribosomal Protein L15E 2238
7 1VQM 15 M 50S Ribosomal Protein L15E 2238
8 3CC2 13 M 50S ribosomal protein L15e 2238
9 1VQL 15 M 50S Ribosomal Protein L15E 2238
10 1VQK 15 M 50S Ribosomal Protein L15E 2238
11 1VQN 16 M 50S Ribosomal Protein L15E 2238
12 1YIJ 15 M 50S Ribosomal Protein L15E 2238
13 1YI2 15 M 50S Ribosomal Protein L15E 2238
14 1VQ9 15 M 50S Ribosomal Protein L15E 2238
15 1VQ7 15 M 50S Ribosomal Protein L15E 2238
16 3CCM 13 M 50S ribosomal protein L15e 2238
17 1VQ5 15 M 50S Ribosomal Protein L15E 2238
18 3CC7 13 M 50S ribosomal protein L15e 2238
19 1YIT 19 M 50S RIBOSOMAL PROTEIN L15E 2238
20 3CCE 13 M 50S ribosomal protein L15e 2238
21 3G6E 14 M 50S ribosomal protein L15e 2238
22 3CPW 14 L 50S ribosomal protein L15e 2238
23 3CCU 13 M 50S ribosomal protein L15e 2238
24 1VQ6 16 M 50S Ribosomal Protein L15E 2238
25 3CCL 13 M 50S ribosomal protein L15e 2238
26 1YJW 19 M 50S RIBOSOMAL PROTEIN L15E 2238
27 1YJ9 15 M 50S Ribosomal Protein L15E 2238
28 3CD6 13 M 50S ribosomal protein L15e 2238
29 3CCV 13 M 50S ribosomal protein L15e 2238
30 3CC4 13 M 50S ribosomal protein L15e 2238
31 2OTL 14 M 50S ribosomal protein L15e 2238
32 3G71 14 M 50S ribosomal protein L15e 2238
33 1VQ4 15 M 50S Ribosomal Protein L15E 2238
34 1YJN 15 M 50S Ribosomal Protein L15E 2238
35 3CMA 13 M 50S ribosomal protein L15e 2238
36 3CCS 13 M 50S ribosomal protein L15e 2238
37 3CCQ 13 M 50S ribosomal protein L15e 2238
38 3I56 13 M 50S ribosomal protein L15e 2238
39 3CCR 13 M 50S ribosomal protein L15e 2238
40 2OTJ 14 M 50S ribosomal protein L15e 2238
41 3CME 13 M 50S ribosomal protein L15e 2238
42 2QEX 14 M 50S ribosomal protein L15e 2238
43 3I55 14 M 50S ribosomal protein L15e 2238
44 3G4S 14 M 50S ribosomal protein L15e 2238
45 3CCJ 13 M 50S ribosomal protein L15e 2238
46 2QA4 15 M 50S ribosomal protein L15e 2238
47 4ADX 23 M RPL15E 145262