Sequence Similarity Clusters for the Entities in PDB 3CCS

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 43 1127
95 % 39 68 784 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 812
70 % 39 68 859
50 % 39 196 211
40 % 39 196 235
30 % 39 196 249
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 549
95 % 39 74 684 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 701
70 % 39 74 747
50 % 39 74 809
40 % 40 78 803
30 % 40 78 802
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 626
95 % 39 68 766 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 68 793
70 % 39 68 841
50 % 39 206 203
40 % 54 628 23
30 % 54 628 38
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 553
95 % 39 74 693 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 716
70 % 39 74 761
50 % 39 74 818
40 % 39 203 226
30 % 39 203 244
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 20 3016
95 % 36 47 1231 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 36 47 1254
70 % 39 68 842
50 % 39 205 206
40 % 39 205 224
30 % 39 205 241
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 546
95 % 39 74 680 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 39 74 705
70 % 39 74 751
50 % 39 76 787
40 % 39 76 820
30 % 39 79 789
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 641
95 % 39 68 785 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 813
70 % 39 68 861
50 % 39 70 864
40 % 39 70 891
30 % 39 70 883
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1026
95 % 39 68 789 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 817
70 % 39 68 864
50 % 39 68 912
40 % 39 72 863
30 % 39 72 869
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 627
95 % 39 68 767 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 794
70 % 39 68 843
50 % 39 70 876
40 % 39 70 908
30 % 39 71 878
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 654
95 % 39 68 775 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 803
70 % 39 68 850
50 % 39 68 901
40 % 39 68 928
30 % 39 203 243
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 557
95 % 39 74 694 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 39 74 719
70 % 39 74 766
50 % 39 77 774
40 % 53 485 42
30 % 53 485 61
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 657
95 % 39 74 691 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 39 74 714
70 % 39 74 759
50 % 39 74 817
40 % 39 211 218
30 % 39 211 236
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 550
95 % 39 74 686 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 709
70 % 39 74 755
50 % 39 212 200
40 % 39 213 217
30 % 39 213 235
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 70 599
95 % 37 70 738 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 37 70 768
70 % 37 70 809
50 % 37 70 865
40 % 37 70 892
30 % 37 70 885
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 551
95 % 39 74 687 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 710
70 % 39 74 756
50 % 39 74 811
40 % 53 441 52
30 % 53 467 66
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 634
95 % 39 68 776 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 804
70 % 39 68 851
50 % 39 68 902
40 % 39 70 897
30 % 39 71 877
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 628
95 % 39 68 786 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 814
70 % 39 68 862
50 % 39 68 909
40 % 39 68 935
30 % 39 70 892
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 63 712
95 % 36 63 871 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 63 897
70 % 36 63 935
50 % 36 63 983
40 % 36 63 1007
30 % 36 63 993
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 17 3790
95 % 11 17 4149 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 11 17 4199
70 % 11 17 4120
50 % 11 17 3996
40 % 11 17 3791
30 % 11 17 3456
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 642
95 % 39 68 768 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 795
70 % 39 68 844
50 % 39 69 878
40 % 39 69 911
30 % 39 69 897
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 655
95 % 39 68 779 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 807
70 % 39 68 855
50 % 39 198 210
40 % 39 198 232
30 % 39 198 248
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 625
95 % 39 68 765 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 792
70 % 39 68 840
50 % 39 68 895
40 % 39 193 239
30 % 39 193 253
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 23 2591
95 % 39 74 679 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 74 704
70 % 39 74 750
50 % 39 74 805
40 % 39 76 819
30 % 40 78 800
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 552
95 % 39 74 689 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 39 74 713
70 % 39 74 758
50 % 39 74 816
40 % 40 205 220
30 % 40 205 240
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 639
95 % 39 68 783 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 811
70 % 39 68 838
50 % 39 68 907
40 % 39 203 227
30 % 54 617 40
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1011
95 % 36 47 1224 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 39 68 791
70 % 39 68 839
50 % 56 108 400
40 % 63 131 314
30 % 77 281 160
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 64 686
95 % 37 64 837 Flexibility: No
Max RMSD: 3.2, Avg RMSD: 0.4
PDBFlex
90 % 37 64 868
70 % 37 64 910
50 % 37 64 961
40 % 37 64 985
30 % 37 64 971
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1020
95 % 36 47 1228 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 47 1252
70 % 36 47 1269
50 % 39 74 806
40 % 39 79 780
30 % 39 79 788
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 42 1163
95 % 33 42 1376 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 33 42 1403
70 % 33 42 1427
50 % 34 46 1292
40 % 34 46 1280
30 % 34 93 639

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 15 M 50S ribosomal protein L15e 2238
2 1VQO 15 M 50S Ribosomal Protein L15E 2238
3 1VQ8 15 M 50S Ribosomal Protein L15E 2238
4 1S72 15 M 50S ribosomal protein L15e 2238
5 1YHQ 15 M 50S Ribosomal Protein L15E 2238
6 1VQP 15 M 50S Ribosomal Protein L15E 2238
7 1VQM 15 M 50S Ribosomal Protein L15E 2238
8 3CC2 13 M 50S ribosomal protein L15e 2238
9 1VQL 15 M 50S Ribosomal Protein L15E 2238
10 1VQK 15 M 50S Ribosomal Protein L15E 2238
11 1VQN 16 M 50S Ribosomal Protein L15E 2238
12 1YIJ 15 M 50S Ribosomal Protein L15E 2238
13 1YI2 15 M 50S Ribosomal Protein L15E 2238
14 1VQ9 15 M 50S Ribosomal Protein L15E 2238
15 1VQ7 15 M 50S Ribosomal Protein L15E 2238
16 3CCM 13 M 50S ribosomal protein L15e 2238
17 1VQ5 15 M 50S Ribosomal Protein L15E 2238
18 3CC7 13 M 50S ribosomal protein L15e 2238
19 1YIT 19 M 50S RIBOSOMAL PROTEIN L15E 2238
20 3CCE 13 M 50S ribosomal protein L15e 2238
21 3G6E 14 M 50S ribosomal protein L15e 2238
22 3CPW 14 L 50S ribosomal protein L15e 2238
23 3CCU 13 M 50S ribosomal protein L15e 2238
24 1VQ6 16 M 50S Ribosomal Protein L15E 2238
25 3CCL 13 M 50S ribosomal protein L15e 2238
26 1YJW 19 M 50S RIBOSOMAL PROTEIN L15E 2238
27 1YJ9 15 M 50S Ribosomal Protein L15E 2238
28 3CD6 13 M 50S ribosomal protein L15e 2238
29 3CCV 13 M 50S ribosomal protein L15e 2238
30 3CC4 13 M 50S ribosomal protein L15e 2238
31 2OTL 14 M 50S ribosomal protein L15e 2238
32 3G71 14 M 50S ribosomal protein L15e 2238
33 1VQ4 15 M 50S Ribosomal Protein L15E 2238
34 1YJN 15 M 50S Ribosomal Protein L15E 2238
35 3CMA 13 M 50S ribosomal protein L15e 2238
36 3CCS 13 M 50S ribosomal protein L15e 2238
37 3CCQ 13 M 50S ribosomal protein L15e 2238
38 3I56 13 M 50S ribosomal protein L15e 2238
39 3CCR 13 M 50S ribosomal protein L15e 2238
40 2OTJ 14 M 50S ribosomal protein L15e 2238
41 3CME 13 M 50S ribosomal protein L15e 2238
42 2QEX 14 M 50S ribosomal protein L15e 2238
43 3I55 14 M 50S ribosomal protein L15e 2238
44 3G4S 14 M 50S ribosomal protein L15e 2238
45 3CCJ 13 M 50S ribosomal protein L15e 2238
46 2QA4 15 M 50S ribosomal protein L15e 2238
47 4ADX 23 M RPL15E 145262