Sequence Similarity Clusters for the Entities in PDB 3CCS

Entity #1 | Chains: A
50S ribosomal protein L2P protein, length: 240 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 43 1165
95 % 39 68 798 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 830
70 % 39 68 880
50 % 39 205 210
40 % 39 205 230
30 % 39 205 249
Entity #10 | Chains: J
50S ribosomal protein L13P protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 578
95 % 39 74 709 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 727
70 % 39 74 772
50 % 39 74 832
40 % 40 78 824
30 % 40 78 821
Entity #11 | Chains: K
50S ribosomal protein L14P protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 644
95 % 39 68 783 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 68 814
70 % 39 68 864
50 % 39 215 204
40 % 54 647 23
30 % 54 647 39
Entity #12 | Chains: L
50S ribosomal protein L15P protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 583
95 % 39 74 718 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 744
70 % 39 74 787
50 % 39 74 843
40 % 39 212 225
30 % 39 212 244
Entity #13 | Chains: M
50S ribosomal protein L15e protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 20 3084
95 % 36 47 1267 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 36 47 1292
70 % 39 68 865
50 % 39 214 205
40 % 39 214 224
30 % 39 214 242
Entity #14 | Chains: N
50S ribosomal protein L18P protein, length: 187 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 574
95 % 39 74 704 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 39 74 731
70 % 39 74 776
50 % 39 76 808
40 % 39 76 837
30 % 39 79 807
Entity #15 | Chains: O
50S ribosomal protein L18e protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 656
95 % 39 68 799 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 831
70 % 39 68 882
50 % 39 70 889
40 % 39 70 916
30 % 39 70 908
Entity #16 | Chains: P
50S ribosomal protein L19e protein, length: 149 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1057
95 % 39 68 804 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 39 68 836
70 % 39 68 886
50 % 39 68 934
40 % 39 72 889
30 % 39 72 892
Entity #17 | Chains: Q
50S ribosomal protein L21e protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 645
95 % 39 68 784 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 815
70 % 39 68 866
50 % 39 70 899
40 % 39 70 930
30 % 39 71 903
Entity #18 | Chains: R
50S ribosomal protein L22P protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 672
95 % 39 68 789 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 821
70 % 39 68 871
50 % 39 68 924
40 % 39 68 951
30 % 39 212 243
Entity #19 | Chains: S
50S ribosomal protein L23P protein, length: 85 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 586
95 % 39 74 719 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 39 74 747
70 % 39 74 792
50 % 39 77 799
40 % 53 496 40
30 % 53 496 58
Entity #2 | Chains: B
50S ribosomal protein L3P protein, length: 338 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 674
95 % 39 74 716 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 39 74 742
70 % 39 74 785
50 % 39 74 842
40 % 39 220 219
30 % 39 220 239
Entity #20 | Chains: T
50S ribosomal protein L24P protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 579
95 % 39 74 711 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 74 737
70 % 39 74 781
50 % 39 221 203
40 % 39 222 218
30 % 39 222 237
Entity #21 | Chains: U
50S ribosomal protein L24e protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 70 618
95 % 37 70 757 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 37 70 789
70 % 37 70 831
50 % 37 70 890
40 % 37 70 917
30 % 37 70 909
Entity #22 | Chains: V
50S ribosomal protein L29P protein, length: 71 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 580
95 % 39 74 712 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 39 74 738
70 % 39 74 782
50 % 39 74 835
40 % 53 451 51
30 % 53 477 63
Entity #23 | Chains: W
50S ribosomal protein L30P protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 649
95 % 39 68 790 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 822
70 % 39 68 872
50 % 39 68 925
40 % 39 70 920
30 % 39 71 902
Entity #24 | Chains: X
50S ribosomal protein L31e protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 646
95 % 39 68 800 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 832
70 % 39 68 883
50 % 39 68 932
40 % 39 68 958
30 % 39 70 915
Entity #25 | Chains: Y
50S ribosomal protein L32e protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 63 727
95 % 36 63 888 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 63 917
70 % 36 63 958
50 % 36 63 1005
40 % 36 63 1025
30 % 36 63 1007
Entity #26 | Chains: Z
50S ribosomal protein L37Ae protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 17 3882
95 % 11 17 4243 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 11 17 4282
70 % 11 17 4191
50 % 11 17 4044
40 % 11 17 3844
30 % 11 17 3506
Entity #27 | Chains: 1
50S ribosomal protein L37e protein, length: 57 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 657
95 % 39 68 785 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 816
70 % 39 68 867
50 % 39 69 902
40 % 39 69 934
30 % 39 69 920
Entity #28 | Chains: 2
50S ribosomal protein L39e protein, length: 50 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 67 673
95 % 39 68 793 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 39 68 825
70 % 39 68 876
50 % 39 207 209
40 % 39 207 229
30 % 39 207 247
Entity #29 | Chains: 3
50S ribosomal protein L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 643
95 % 39 68 782 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 39 68 813
70 % 39 68 863
50 % 39 68 918
40 % 39 202 234
30 % 39 202 251
Entity #3 | Chains: C
50S ribosomal protein L4P protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 23 2653
95 % 39 74 703 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 39 74 730
70 % 39 74 775
50 % 39 74 828
40 % 39 76 836
30 % 40 78 817
Entity #30 | Chains: 0
23S RIBOSOMAL RNA rna, length: 2923 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #31 | Chains: 9
5S RIBOSOMAL RNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
50S ribosomal protein L5P protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 74 582
95 % 39 74 714 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 39 74 741
70 % 39 74 784
50 % 39 74 840
40 % 40 214 221
30 % 40 214 240
Entity #5 | Chains: E
50S ribosomal protein L6P protein, length: 178 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 39 68 654
95 % 39 68 797 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 39 68 829
70 % 39 68 861
50 % 39 68 930
40 % 39 212 226
30 % 54 636 40
Entity #6 | Chains: F
50S ribosomal protein L7Ae protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1038
95 % 36 47 1252 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 39 68 812
70 % 39 68 862
50 % 56 108 413
40 % 63 133 334
30 % 77 292 157
Entity #7 | Chains: G
50S ribosomal protein L10E protein, length: 348 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 64 703
95 % 37 64 853 Flexibility: No
Max RMSD: 3.2, Avg RMSD: 0.4
PDBFlex
90 % 37 64 886
70 % 37 64 930
50 % 37 64 984
40 % 37 64 1003
30 % 37 64 985
Entity #8 | Chains: H
50S ribosomal protein L10e protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 47 1051
95 % 36 47 1259 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 36 47 1286
70 % 36 47 1313
50 % 39 74 829
40 % 39 79 802
30 % 39 79 806
Entity #9 | Chains: I
50S ribosomal protein L11P protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 42 1205
95 % 33 42 1435 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 33 42 1457
70 % 33 42 1473
50 % 34 46 1325
40 % 34 46 1314
30 % 34 98 621

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 15 M 50S ribosomal protein L15e 2238
2 3CC2 13 M 50S ribosomal protein L15e 2238
3 3CCM 13 M 50S ribosomal protein L15e 2238
4 3CC7 13 M 50S ribosomal protein L15e 2238
5 3CCE 13 M 50S ribosomal protein L15e 2238
6 3CPW 14 L 50S ribosomal protein L15e 2238
7 3CCU 13 M 50S ribosomal protein L15e 2238
8 3CCL 13 M 50S ribosomal protein L15e 2238
9 3CD6 13 M 50S ribosomal protein L15e 2238
10 3CCV 13 M 50S ribosomal protein L15e 2238
11 3CC4 13 M 50S ribosomal protein L15e 2238
12 3CMA 13 M 50S ribosomal protein L15e 2238
13 3CCS 13 M 50S ribosomal protein L15e 2238
14 3CCQ 13 M 50S ribosomal protein L15e 2238
15 3CCR 13 M 50S ribosomal protein L15e 2238
16 3CME 13 M 50S ribosomal protein L15e 2238
17 2QEX 14 M 50S ribosomal protein L15e 2238
18 3CCJ 13 M 50S ribosomal protein L15e 2238
19 2QA4 15 M 50S ribosomal protein L15e 2238
20 4ADX 23 M RPL15E 145262